| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mchl_3001 |
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| Symbol | |
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| ID | 7118197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium chloromethanicum CM4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011757 |
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| Strand | + |
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| Start bp | 3171418 |
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| End bp | 3174282 |
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| Gene Length | 2865 bp |
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| Protein Length | 954 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 643525751 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002421767 |
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| Protein GI | 218530951 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.140152 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCTTC CACGCCGACC CTTTGGCTTT TCGCTCGGGC GCACCGCCGT CGGGGCCGTG
CTGCGCGGTG GTCGCACGAT TCGCGGCCGC ATCTTCCTCG CCTTCCTGAT GCTGAGCGCG
ATCACGGCGG CACTCGGCGG GTACGCCGCC TTCGGCATCA TGACGACGGG TGCGCTGGTC
GACAAAACCT ACGATCGCTC TCTGATGGCG ATCAATTACG CCCGGGCTGC CGCGACCGAC
CTCGCGATGC TTCAGGCTGC GGTGGCCCGA GCCCGTCTCG CGGGCGATAG CGCCGAGCGG
CGGACGCTCG AAGCGCGGAT CGAGGCGCTG ACGCAGTCGT TCGAGGAAGA TCTGGAGATC
GCCGCGGACC GGGCCCAGTC GGAGCGTGCG ACGCGGGAGG CCGCCGCCGC CAAGGACGCC
GTCGCGCACT GGCTCGCCGC CCGGAGTGAG TTCGGCCCCG ATCAACAGAC GGCGGATGTC
TGGCAGGCGC TCGATGCCCA CGCGGCGGTG GCCGAGCAGC ATATCGACCT GCTGATCAAC
TTCACCGCCG GGGACGGCTT CTCCTATCGG CAGACGGCCC GCGCGGACGT GGCCCGCGAC
GTGCGGCTCA GCATCTTCGC GACCTCGCTC GCGATCGTTC TCTCGGGCAT CGTCGCCTTG
CTCCTGTTGC GACAGATCGT TCGGCCGGTG GCCGACGCCT CGACGGTCGC GAGCCGCATC
GCCGCCGGCG AGTTGACCGT GCGCGTGCCC GAGGGCGGCG ACGACGAGTT CGGCGCCCTG
CTGCGCGCCA TGGCGGTCAT GCGCGACAAC ATCGCGGCGA TGATGCAGGA GGAGGTCGCT
CAGCGCCGCT CCGCCCAAAG CCTGCTCGCC GACGCGGTGC AGGGGTCGAT TGAAGGCATC
GTCGTTGTCG ATGCCGGGGG CCGCATCGTG CTCGCGAACG CGCGGGCGGC CGCTTTGCTC
GGGATCGATC AGGCCGAGCC CGGCCATCGC CCGCTCTCTG ACACGCGCGG TTCGGCCGTT
GCCGATGCCC TGCTCGCCAT GCCCGGTCAC GCCACCCTGA CTGCCGAGAC GCACACCGCC
GACGGGCGCT GGCTTCGCAT CAGCCGCAGT CCCACACGCG AGGGCGGCTT CGTTGCCGTC
TGCAGCGACG TCTCCCTGCT GAAGGAGCAG GAGGATCAGC TCAAGCGCAG CAATGCGCAG
CTCGATGCGG CTCTCAGCAA CATGCTCCAG GGGCTCTGCC TCTACGACGC CGAGGGCGGC
CTTCTCGTCT ACAATCGCCG CTTCTGCGAC ATGTTCGGCG TCGATGCCGC CGCGTTGCGT
CCCGGCATGA GCATCCGCGA CGTCGCCCGT CTCGTCGAAG CCTCGTCCGA TAGCGGCCGC
GCGATCGATC TCCTCGTCGA ACAGGAGGCC CTGCTCCAAC GCGGGTTGAG CGCTTCGCTC
TGTTGCCCGA TCCGGACGGA TTGCATCGTC GCGCTCAAGC AGCAGCCGAC GGCGGAGGGT
GGTTGGATCG CCACCTACGA GGATGTCACC CAGCGCTACG AGGCGGAAGC GCGGATCATC
ACCATGGCGC GCAAGGACGC GCTGACGGGA CTCGCCAACC GCATGGTGTT CGGCGAGCGC
CTGGAAGAGG CCGCCGCGCG TCTCGACGAA GGGGCCGGTG CCGGGTTCGC CACGCTCTGC
CTCGATCTCG ACCGGTTCAA GGAAGTCAAC GATACGCTCG GCCATCCCAT CGGCGACGGG
CTGCTGCGCA GCGTTGCGGA ACGGCTGCAA GGCTGCCTGC GCGACACCGA TCTCGTGGCG
CGCCTGGGGG GCGACGAGTT CGCCATCGTC CAAGCCGGCG TCCAGGCGGG CACGCATGCG
CGGCGGGATG CGAGCGCCCT GGCCAAACGT TTGATCGCGG CCTTCCAGCA GCCCTTCCTG
CTCGACGGGC ACACCGTGAC GGTCGGGCTC AGCATCGGCA TCTCGCTCGC ACCGGAACAC
GGAACGAGCC CGGAGAAGCT GCTGAAGAGC GCCGATCTCG CGCTCTACCG CGCCAAGGCG
ACCGGCCGGG GCTGCTGGGC GTTCTTCGAC GAGGAGATGG ACGTCGAGCT GCGCAAGCGC
CGGGCTCTCG AAAGCGATCT CAAGAAGGCT GTCGGCAACG GCGAGTTCGA GCTCGTGTTC
CAGCCGATCG TCAAGCTCGA CCGGCAGCGC ATCGCCAGTT GCGAGGCGCT GCTGCGCTGG
CGCCATCCCG AGCGCGGCTA TGTCTCTCCC GCGGATTTCA TTCCCCTGGC GGAGGAGACG
GGCACCATTG GCGAGATCGG CGAATGGGTG CTGCGCAAGG CTTGCAGCGA GGCCGCGACC
TGGCCCTCGA ACATCCGCGT CGCCGTCAAT GTCTCCGCCG CGCAATTCAA GAACGCGGCC
GTCGTCCGGG CGGTGATGGA TGCGCTCGCC GCGAGCGGGT TGCCAGCGCA CCGGCTGGAA
CTGGAAATCA CCGAGTCAGT CCTGCTCAAC GACAGCGTGA CGACGCTGGC AACGCTCCAC
ACCCTGAAGC GCCTCGGTGT GCGGGTGGCG ATGGACGATT TCGGCACCGG CTTCTCGTCG
TTGAGCTACC TGCAGAGCTT CCCGTTCGAC AAGATCAAGA TCGACCAGTC CTTCGTGCGT
AACCTTGCCG CGCCGGGCAA CTCGCGACTG ATCGTGCGCT CCGTGGTCGG CCTCGGCCGC
AGCCTCGGCA TCACGACCAC GGCGGAGGGC ATCGAGACCG AGGCCCAACT CGAGCAGCTT
CGGCTCGAAG GATGCGACGA GGGTCAGGGC TACCTGTTCA GCCGCCCCGT CCCCTCGGCC
ACGATCCGTG AATTGGTGAC GGCACTCGGC CGCAACGCGG CCTGA
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| Protein sequence | MSLPRRPFGF SLGRTAVGAV LRGGRTIRGR IFLAFLMLSA ITAALGGYAA FGIMTTGALV
DKTYDRSLMA INYARAAATD LAMLQAAVAR ARLAGDSAER RTLEARIEAL TQSFEEDLEI
AADRAQSERA TREAAAAKDA VAHWLAARSE FGPDQQTADV WQALDAHAAV AEQHIDLLIN
FTAGDGFSYR QTARADVARD VRLSIFATSL AIVLSGIVAL LLLRQIVRPV ADASTVASRI
AAGELTVRVP EGGDDEFGAL LRAMAVMRDN IAAMMQEEVA QRRSAQSLLA DAVQGSIEGI
VVVDAGGRIV LANARAAALL GIDQAEPGHR PLSDTRGSAV ADALLAMPGH ATLTAETHTA
DGRWLRISRS PTREGGFVAV CSDVSLLKEQ EDQLKRSNAQ LDAALSNMLQ GLCLYDAEGG
LLVYNRRFCD MFGVDAAALR PGMSIRDVAR LVEASSDSGR AIDLLVEQEA LLQRGLSASL
CCPIRTDCIV ALKQQPTAEG GWIATYEDVT QRYEAEARII TMARKDALTG LANRMVFGER
LEEAAARLDE GAGAGFATLC LDLDRFKEVN DTLGHPIGDG LLRSVAERLQ GCLRDTDLVA
RLGGDEFAIV QAGVQAGTHA RRDASALAKR LIAAFQQPFL LDGHTVTVGL SIGISLAPEH
GTSPEKLLKS ADLALYRAKA TGRGCWAFFD EEMDVELRKR RALESDLKKA VGNGEFELVF
QPIVKLDRQR IASCEALLRW RHPERGYVSP ADFIPLAEET GTIGEIGEWV LRKACSEAAT
WPSNIRVAVN VSAAQFKNAA VVRAVMDALA ASGLPAHRLE LEITESVLLN DSVTTLATLH
TLKRLGVRVA MDDFGTGFSS LSYLQSFPFD KIKIDQSFVR NLAAPGNSRL IVRSVVGLGR
SLGITTTAEG IETEAQLEQL RLEGCDEGQG YLFSRPVPSA TIRELVTALG RNAA
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