Gene Mchl_3001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMchl_3001 
Symbol 
ID7118197 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium chloromethanicum CM4 
KingdomBacteria 
Replicon accessionNC_011757 
Strand
Start bp3171418 
End bp3174282 
Gene Length2865 bp 
Protein Length954 aa 
Translation table11 
GC content68% 
IMG OID643525751 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_002421767 
Protein GI218530951 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.140152 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCTTC CACGCCGACC CTTTGGCTTT TCGCTCGGGC GCACCGCCGT CGGGGCCGTG 
CTGCGCGGTG GTCGCACGAT TCGCGGCCGC ATCTTCCTCG CCTTCCTGAT GCTGAGCGCG
ATCACGGCGG CACTCGGCGG GTACGCCGCC TTCGGCATCA TGACGACGGG TGCGCTGGTC
GACAAAACCT ACGATCGCTC TCTGATGGCG ATCAATTACG CCCGGGCTGC CGCGACCGAC
CTCGCGATGC TTCAGGCTGC GGTGGCCCGA GCCCGTCTCG CGGGCGATAG CGCCGAGCGG
CGGACGCTCG AAGCGCGGAT CGAGGCGCTG ACGCAGTCGT TCGAGGAAGA TCTGGAGATC
GCCGCGGACC GGGCCCAGTC GGAGCGTGCG ACGCGGGAGG CCGCCGCCGC CAAGGACGCC
GTCGCGCACT GGCTCGCCGC CCGGAGTGAG TTCGGCCCCG ATCAACAGAC GGCGGATGTC
TGGCAGGCGC TCGATGCCCA CGCGGCGGTG GCCGAGCAGC ATATCGACCT GCTGATCAAC
TTCACCGCCG GGGACGGCTT CTCCTATCGG CAGACGGCCC GCGCGGACGT GGCCCGCGAC
GTGCGGCTCA GCATCTTCGC GACCTCGCTC GCGATCGTTC TCTCGGGCAT CGTCGCCTTG
CTCCTGTTGC GACAGATCGT TCGGCCGGTG GCCGACGCCT CGACGGTCGC GAGCCGCATC
GCCGCCGGCG AGTTGACCGT GCGCGTGCCC GAGGGCGGCG ACGACGAGTT CGGCGCCCTG
CTGCGCGCCA TGGCGGTCAT GCGCGACAAC ATCGCGGCGA TGATGCAGGA GGAGGTCGCT
CAGCGCCGCT CCGCCCAAAG CCTGCTCGCC GACGCGGTGC AGGGGTCGAT TGAAGGCATC
GTCGTTGTCG ATGCCGGGGG CCGCATCGTG CTCGCGAACG CGCGGGCGGC CGCTTTGCTC
GGGATCGATC AGGCCGAGCC CGGCCATCGC CCGCTCTCTG ACACGCGCGG TTCGGCCGTT
GCCGATGCCC TGCTCGCCAT GCCCGGTCAC GCCACCCTGA CTGCCGAGAC GCACACCGCC
GACGGGCGCT GGCTTCGCAT CAGCCGCAGT CCCACACGCG AGGGCGGCTT CGTTGCCGTC
TGCAGCGACG TCTCCCTGCT GAAGGAGCAG GAGGATCAGC TCAAGCGCAG CAATGCGCAG
CTCGATGCGG CTCTCAGCAA CATGCTCCAG GGGCTCTGCC TCTACGACGC CGAGGGCGGC
CTTCTCGTCT ACAATCGCCG CTTCTGCGAC ATGTTCGGCG TCGATGCCGC CGCGTTGCGT
CCCGGCATGA GCATCCGCGA CGTCGCCCGT CTCGTCGAAG CCTCGTCCGA TAGCGGCCGC
GCGATCGATC TCCTCGTCGA ACAGGAGGCC CTGCTCCAAC GCGGGTTGAG CGCTTCGCTC
TGTTGCCCGA TCCGGACGGA TTGCATCGTC GCGCTCAAGC AGCAGCCGAC GGCGGAGGGT
GGTTGGATCG CCACCTACGA GGATGTCACC CAGCGCTACG AGGCGGAAGC GCGGATCATC
ACCATGGCGC GCAAGGACGC GCTGACGGGA CTCGCCAACC GCATGGTGTT CGGCGAGCGC
CTGGAAGAGG CCGCCGCGCG TCTCGACGAA GGGGCCGGTG CCGGGTTCGC CACGCTCTGC
CTCGATCTCG ACCGGTTCAA GGAAGTCAAC GATACGCTCG GCCATCCCAT CGGCGACGGG
CTGCTGCGCA GCGTTGCGGA ACGGCTGCAA GGCTGCCTGC GCGACACCGA TCTCGTGGCG
CGCCTGGGGG GCGACGAGTT CGCCATCGTC CAAGCCGGCG TCCAGGCGGG CACGCATGCG
CGGCGGGATG CGAGCGCCCT GGCCAAACGT TTGATCGCGG CCTTCCAGCA GCCCTTCCTG
CTCGACGGGC ACACCGTGAC GGTCGGGCTC AGCATCGGCA TCTCGCTCGC ACCGGAACAC
GGAACGAGCC CGGAGAAGCT GCTGAAGAGC GCCGATCTCG CGCTCTACCG CGCCAAGGCG
ACCGGCCGGG GCTGCTGGGC GTTCTTCGAC GAGGAGATGG ACGTCGAGCT GCGCAAGCGC
CGGGCTCTCG AAAGCGATCT CAAGAAGGCT GTCGGCAACG GCGAGTTCGA GCTCGTGTTC
CAGCCGATCG TCAAGCTCGA CCGGCAGCGC ATCGCCAGTT GCGAGGCGCT GCTGCGCTGG
CGCCATCCCG AGCGCGGCTA TGTCTCTCCC GCGGATTTCA TTCCCCTGGC GGAGGAGACG
GGCACCATTG GCGAGATCGG CGAATGGGTG CTGCGCAAGG CTTGCAGCGA GGCCGCGACC
TGGCCCTCGA ACATCCGCGT CGCCGTCAAT GTCTCCGCCG CGCAATTCAA GAACGCGGCC
GTCGTCCGGG CGGTGATGGA TGCGCTCGCC GCGAGCGGGT TGCCAGCGCA CCGGCTGGAA
CTGGAAATCA CCGAGTCAGT CCTGCTCAAC GACAGCGTGA CGACGCTGGC AACGCTCCAC
ACCCTGAAGC GCCTCGGTGT GCGGGTGGCG ATGGACGATT TCGGCACCGG CTTCTCGTCG
TTGAGCTACC TGCAGAGCTT CCCGTTCGAC AAGATCAAGA TCGACCAGTC CTTCGTGCGT
AACCTTGCCG CGCCGGGCAA CTCGCGACTG ATCGTGCGCT CCGTGGTCGG CCTCGGCCGC
AGCCTCGGCA TCACGACCAC GGCGGAGGGC ATCGAGACCG AGGCCCAACT CGAGCAGCTT
CGGCTCGAAG GATGCGACGA GGGTCAGGGC TACCTGTTCA GCCGCCCCGT CCCCTCGGCC
ACGATCCGTG AATTGGTGAC GGCACTCGGC CGCAACGCGG CCTGA
 
Protein sequence
MSLPRRPFGF SLGRTAVGAV LRGGRTIRGR IFLAFLMLSA ITAALGGYAA FGIMTTGALV 
DKTYDRSLMA INYARAAATD LAMLQAAVAR ARLAGDSAER RTLEARIEAL TQSFEEDLEI
AADRAQSERA TREAAAAKDA VAHWLAARSE FGPDQQTADV WQALDAHAAV AEQHIDLLIN
FTAGDGFSYR QTARADVARD VRLSIFATSL AIVLSGIVAL LLLRQIVRPV ADASTVASRI
AAGELTVRVP EGGDDEFGAL LRAMAVMRDN IAAMMQEEVA QRRSAQSLLA DAVQGSIEGI
VVVDAGGRIV LANARAAALL GIDQAEPGHR PLSDTRGSAV ADALLAMPGH ATLTAETHTA
DGRWLRISRS PTREGGFVAV CSDVSLLKEQ EDQLKRSNAQ LDAALSNMLQ GLCLYDAEGG
LLVYNRRFCD MFGVDAAALR PGMSIRDVAR LVEASSDSGR AIDLLVEQEA LLQRGLSASL
CCPIRTDCIV ALKQQPTAEG GWIATYEDVT QRYEAEARII TMARKDALTG LANRMVFGER
LEEAAARLDE GAGAGFATLC LDLDRFKEVN DTLGHPIGDG LLRSVAERLQ GCLRDTDLVA
RLGGDEFAIV QAGVQAGTHA RRDASALAKR LIAAFQQPFL LDGHTVTVGL SIGISLAPEH
GTSPEKLLKS ADLALYRAKA TGRGCWAFFD EEMDVELRKR RALESDLKKA VGNGEFELVF
QPIVKLDRQR IASCEALLRW RHPERGYVSP ADFIPLAEET GTIGEIGEWV LRKACSEAAT
WPSNIRVAVN VSAAQFKNAA VVRAVMDALA ASGLPAHRLE LEITESVLLN DSVTTLATLH
TLKRLGVRVA MDDFGTGFSS LSYLQSFPFD KIKIDQSFVR NLAAPGNSRL IVRSVVGLGR
SLGITTTAEG IETEAQLEQL RLEGCDEGQG YLFSRPVPSA TIRELVTALG RNAA