| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mchl_1915 |
|---|
| Symbol | |
|---|
| ID | 7116730 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium chloromethanicum CM4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011757 |
|---|
| Strand | + |
|---|
| Start bp | 1975756 |
|---|
| End bp | 1976922 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 643524679 |
|---|
| Product | succinyl-diaminopimelate desuccinylase |
|---|
| Protein accession | YP_002420706 |
|---|
| Protein GI | 218529890 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.121037 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGCCCT TGTCCGACCA TTCCCCCCTC GCCCTCGCCC AGGCACTGAT CCGCTGCCCC
TCCGTGACCC CGGAGGAGGG AGGGGCTCTG TCGTTCCTGG CGGATCGTCT TTCGCGGGCG
GGCTTCTCGG TCGAGCGTCC CGTCTTCTCC GAGCCCGGCA CGCCGGACAT CCAGAATCTC
TACGCCCGCA TCGGCACCGC AGGCCCGGTC CTCGTCTTTG CCGGCCATAC CGACGTGGTG
CCGCCCGGCG AGACGGAGGC CTGGACCCAC GGGCCGTTCT CGGGCGAAGT CGCCGACGGC
TTTCTCTACG GGCGCGGCGC GGTGGACATG AAGGGCGGCA TCGCCTGCAT GCTCGCGGCA
ACGCTCGCCT TCCTCGACCG GCACAGGCCG GATTTCGGCG GCTCCATCGC TTTTCTCGTC
ACCGGTGACG AGGAGGGGCC AGCGGTCAAC GGCACCGTGA AGCTGCTGGA TTGGGCGAAG
GCGAGGGGCG AGCGCTTCGA CCATTGCCTG CTCGGCGAGC CGACCAACCC CGATACCCTC
GGCGAGATGA TCAAGATCGG CCGGCGCGGC TCGCTGACCG GGCGCATCAC CGTGCACGGG
CGCCAGGGCC ACGTCGCCTA TCCGCACCGG GCCGAGAATC CAATTCCCGG CCTGCTTCGC
CTCGCCTCGG CGCTGACGGC CGACCCCCTC GACGGCGGCA CGGCGCATTT CGACGCGTCG
AACCTCGAAT TCACGACGAT CGATGTCGGC AACCCGGCCA CCAACGTGAT CCCGGCCTCG
GCCAAGGCCG TGTTCAACGT GCGCTTCAAC GATGACTGGA CGGCGGATAC CCTCGGTGCC
GAGATCCGGC GGCGGCTGGA GGCGGCGGCC GGCAACGCAG TGCGGTTCAG CCTCGACCTT
CAGCCCTCGA ACTCGCCGGC CTTCCTGACG CAGCCCGACG CCTTCGTCGA TCGGGTGGCC
GATGCGATTG AGGCCGAGAC CGGACGGCGC CCGGCGCTCT CCACCACGGG GGGCACCTCG
GATGCCCGCT TCATCAAGGA TGCCTGTCCG GTGATCGAGT TCGGCCTTGT CGGGCGGACC
ATGCACGAGA CCGACGAGCG GGTGGCGGTG GCGGATCTCG ACCGGCTCAC CGCGATCTAC
GGGCGGGTGT TGGACGCTTA CTTCTGA
|
|---|
| Protein sequence | MPPLSDHSPL ALAQALIRCP SVTPEEGGAL SFLADRLSRA GFSVERPVFS EPGTPDIQNL
YARIGTAGPV LVFAGHTDVV PPGETEAWTH GPFSGEVADG FLYGRGAVDM KGGIACMLAA
TLAFLDRHRP DFGGSIAFLV TGDEEGPAVN GTVKLLDWAK ARGERFDHCL LGEPTNPDTL
GEMIKIGRRG SLTGRITVHG RQGHVAYPHR AENPIPGLLR LASALTADPL DGGTAHFDAS
NLEFTTIDVG NPATNVIPAS AKAVFNVRFN DDWTADTLGA EIRRRLEAAA GNAVRFSLDL
QPSNSPAFLT QPDAFVDRVA DAIEAETGRR PALSTTGGTS DARFIKDACP VIEFGLVGRT
MHETDERVAV ADLDRLTAIY GRVLDAYF
|
|---|
| |