| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mchl_1532 |
|---|
| Symbol | |
|---|
| ID | 7115142 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium chloromethanicum CM4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011757 |
|---|
| Strand | + |
|---|
| Start bp | 1585081 |
|---|
| End bp | 1587516 |
|---|
| Gene Length | 2436 bp |
|---|
| Protein Length | 811 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643524292 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_002420326 |
|---|
| Protein GI | 218529510 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.308961 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCACTG ATCCCGTCCC CGAGATGCGC CGCGACGGCA CGACGACATC GGACGACACC
ACGACATCGA CGCAGAGCTT CAGTGCCTTG ATCAATCGGC TTCGGCGCAT CGACACGCTC
GACGGGCTGC CGGCGCGCTA CAGCCTGCAG GTTCGTGCCG GATTGCTCGA CGAGACCTTG
AAGCTCGCCA ACTACTCTGC TGTCACCCAC CTGATCATCG CGGTCGCGGT CGCCTACTTC
TTTTGGGATT CGGCGCCGCG TGCCTATCTG CTTGGTCTGC TCGCCGTCGT CGCCGTGGTG
ATCGCGGCGA CCATCTACAC GACCTGGCTC TACCAGCGCC TCTACGGCGA CGCCGTCACC
GAGGTCGGCG TCGGGCGCGG CTACCGGATC TCCGCCGGGT TCGCTCTCGC GCTGGGTCTG
GCCTGGGCCA CCATGCCGGT CGTGCTCTTC TGCTCAGCCA GCAGCGACGA GCGGCTGCTC
GTCGTCAGTA TCGCCGCCGG CCTGATCTCG GACGCCTATG TCGTCGGGCC GCTCCTGTCG
GTCTCCTACC TCTTCGCGAT TCCGGTGATC GTCGGCAGCT TTATCGGGCT GGCCCGCAGC
GGTGAGCCGA TTGCCCTAAG CATCGCCGTC CTGCTCCTCG TCTACGCGAC CTTCGTCGGG
GTGAGTGTCC ACCGGATGAG CCGCCTCTCG CGTCAGCGCA TCCTGGACCG CGTCCGCGTC
GAGGATCAGA GCGAGACCAT CGGCCTTCTC CTCAACGAGT TCGAGGAGAA CACGAGCGAC
TGGCTCTGGG AGACGAACGA AACCGGCCGT TTCCAGCACG TGTCGCCGCG GATGGCCGAC
GCTCTGGGCT GCCCGATCGA GCGGCTTCAG CGCAGTTCGT TCCGGGATCT GCTCCGTGCC
GGGGAGGACC GGGACGAGGA TCGGACCACC GACCTGCTCG GCCATCTTCG GCAGGGCAAG
GCCTTCCATG AGTGCCTCGT CGCGATCGAG ACCCCGACCG GCCTGCGGTG GCTCGCGTTG
AGCGGCAAGC CCTTCGCCGA TCAGCGCGGG ACCTTAGCGG GGTTCCGCGG CGTCGGCTCC
GACGTGACGC AGCGCCGGGA GGCGGACGCC CACATCGCCT ATCTCGCCAC GCGCGACCCT
CTGACCGGAC TGTCGAACCG GGCCGTTTTC CACGATGTGG CGGGGGAGGC CTGCACGGCC
TCCATGCGCG GAGGCCCACG CGTCCACCTG CTGTATCTCG ACCTCGACGG CTTCAAGAAG
GTCAACGACA CGGCCGGCCA TTGTGCGGGT GACGACCTCC TGCGCCAGGT CGCCGACCGC
CTGTGCGCCA GCGTCGATGC GAACGCGCAA GTGTTCCGCC TCGGCGGCGA CGAGTTCGCG
ATCCTGCACC GTAGCCGGGA GAGCGCGGAG GCGGAAATCC TGGCCGAGGC TGTCATCGCC
TCCCTGCACC GGCCCTACCT CATCGAGGGC ATGCAGGCCG AGATCGGCGT CAGCATCGGG
ATCGCACGGG CACCGCAGGA CGCGACCGAG CTTCAGGACC TGATGCGGAA GGCCGACCTT
GCCCTCTACA CCGCCAAGGA GGCCGGCAGG GGCCGCTGGC ATTGCTTCGA GGCCGACCTC
GAACGCCGCG TCCAGCGCTG GCGGGAGCTG GACAGCGCCA TGCGGGCCGG CCTGACGAAC
GGCGAGATGG AGCTGCACTA TCAGCCGCTC GTGAGCCTGC AGGACGGCGA GGTCGTGGGA
TGCGAGGCGT TGCTGCGCTG GACCCGGCCC GGCCTCGGTC CCGTCTCGCC CGCCGAGCTG
ATCCCGATTG CCGAGAGCAC CGGCTTCGTC ATCACGATCG GGCGCTGGGC CTTGCGGACG
GCCTGTGCGG AAGCCCTGAC ATGGCCTGTG CCGATGCGGG TTGCCGTGAA CATCTCATCG
ACCCACTTCC GTCTCCCCGA CTTCTTCCAG GAAGTCGAGG CGGTCCTCGA CGCGACAGGG
CTCGCGCCGG AGCGGCTCGA GATCGAGATC ACGGAGTCGA TCTTTCTCGC CAACACGCCG
CATGTCCTGG AAAACCTTCA GGCGCTGCGT GCGAAGGGGG TGCGGATCGC TCTCGACGAT
TTCGGGACGG GCTACTCGTC GCTGAGCTAT CTGACCCAAT ACCCTGTCGA CAAGATCAAG
ATCGACCGGG CCTTCGTGCG CGACCTGAGC AGCCGGCCGG AATGCCTGGC CGTGATCAAG
GCGATCATGG TCATCGCAGG CGACCTCAGG ATCGACGTCA CCGTCGAGGG CGTCGAGACG
GAGCAGCAGG CGGAACTGCT CCGGCTGCGG CGCTGCAACA GTGCGCAGGG CTTCCTCTAC
AGCCCGGCCC GCCCCTCCGG CGAGGTCACC GGGCTGATCG AGCTCATCCC CCAGGCCGTC
AGGCAGGCGC GGCAACCTGT CCGGAACGTC GCCTGA
|
|---|
| Protein sequence | MPTDPVPEMR RDGTTTSDDT TTSTQSFSAL INRLRRIDTL DGLPARYSLQ VRAGLLDETL
KLANYSAVTH LIIAVAVAYF FWDSAPRAYL LGLLAVVAVV IAATIYTTWL YQRLYGDAVT
EVGVGRGYRI SAGFALALGL AWATMPVVLF CSASSDERLL VVSIAAGLIS DAYVVGPLLS
VSYLFAIPVI VGSFIGLARS GEPIALSIAV LLLVYATFVG VSVHRMSRLS RQRILDRVRV
EDQSETIGLL LNEFEENTSD WLWETNETGR FQHVSPRMAD ALGCPIERLQ RSSFRDLLRA
GEDRDEDRTT DLLGHLRQGK AFHECLVAIE TPTGLRWLAL SGKPFADQRG TLAGFRGVGS
DVTQRREADA HIAYLATRDP LTGLSNRAVF HDVAGEACTA SMRGGPRVHL LYLDLDGFKK
VNDTAGHCAG DDLLRQVADR LCASVDANAQ VFRLGGDEFA ILHRSRESAE AEILAEAVIA
SLHRPYLIEG MQAEIGVSIG IARAPQDATE LQDLMRKADL ALYTAKEAGR GRWHCFEADL
ERRVQRWREL DSAMRAGLTN GEMELHYQPL VSLQDGEVVG CEALLRWTRP GLGPVSPAEL
IPIAESTGFV ITIGRWALRT ACAEALTWPV PMRVAVNISS THFRLPDFFQ EVEAVLDATG
LAPERLEIEI TESIFLANTP HVLENLQALR AKGVRIALDD FGTGYSSLSY LTQYPVDKIK
IDRAFVRDLS SRPECLAVIK AIMVIAGDLR IDVTVEGVET EQQAELLRLR RCNSAQGFLY
SPARPSGEVT GLIELIPQAV RQARQPVRNV A
|
|---|
| |