| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mchl_1020 |
|---|
| Symbol | |
|---|
| ID | 7118523 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium chloromethanicum CM4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011757 |
|---|
| Strand | - |
|---|
| Start bp | 1042011 |
|---|
| End bp | 1043537 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 643523816 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_002419858 |
|---|
| Protein GI | 218529042 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.590428 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACCAGA CGACACCCTT CCATCTGGCG CGGCAGCGGG ACCGCGCTCC TTCGGGCGGA
CGCGCGAAGG CGTGGATCGC AGGCTTGGTT CTCCTACCCC TCGCCGTTGC GGGCGGCGCA
CTTGCGGGGC TGCGGACGGG CGAGGCGGGA TGGCCGCTGC CCTCATGGCT ACCGTCCTCG
GTCTCCAGCC TGCTTGCCGG TCGCGGCACG CAGCCGTCCG CGGCCGCGGG TGTCCCCATC
CTCTACTACC GCGATCCCGA CAAAGCGCTC TACGCGCAGG CTCCGGCCAA GACGCCCGAC
GGACGCGACT ACCTTCCCGT GCATCTCGGC GAGGATGTCG ACTTCGAGCT GCGGCCCGCC
GCCGCGAAGG GGGCCGAGGC GAACGCCACC TACGCCGCGC GCCCGGACGA GACCCGGAAG
ATCCTCTACT ACCGCAACCC GATGGGCCTG CCCGACACCT CACCGGTGCC GAAGAAGGAC
TCGATGGGGA TGGACTACAT CCCCGTCTAC GAGGGCGAGG CCGAGGAAGG CAACACCGTC
AAGATCTCGC CCGGCAAGGT CCAGCGCACC GGCGTCCGCT CCGAGAGGGC CGAACGCCGC
GTCGTCAGCC GAGCCGTGCG GGTGCCCGGC ACCGTGACGC TCGACGAGCG GCGCGTGACG
GTCGTGGCAA CGCGGTCCGA TGCCTATGTC GACCACGTCG AGAACGTGAC GACCGGAGAC
CGCGTGCGCA AAGGGCAGCC CCTGGTCCAC GTCTACTCGC CCGAGATCAA CGCGGCCGCC
GCCCAGCTCA TCGCGAACCC GGGCTTCGAC GGCGCCCGGC GGCGTCTGCA GAACCTGAAC
GTCTCGGAGG AGGTGATCAA CGAGATGGAG CGCATCCGGA AGGTGCCGAT GGCGATAACC
TGGACGTCGC CCCGGGATGG CCTCGTGCTG CAACGCACCG CAGTCGAAGG CATGAAGGCC
GCGGCCGGCG ACACCCTGTT CCGGATCGGC GACATCTCGA CCCTGTGGGT GCTGGCCGAC
GTGCCCGAGT ACGACCTCGG CAGTGTCAAG GTAGGACAGC CCGTCAGCGT GCGCGTGCGC
TCGCTGCCCG GGCGAAGTTT CACCGGCAAG GTCGGGCTGA TCTACCCGCA GGTGAACACG
CAAACCCGCA CCACCCGCGT GCGCATCGAA TTGCCGAACC CCGACGGGGT ACTGCTGCCC
GACATGTACG CCGACGTCGA GATCGGGACC GGGGCGACGA AGCCCGTCGT CGCGGTCCCG
AACGATGCCG TCATCGACAC GGGCGCGCGC CAGGTCGTGC TCGTCGACAA GGGCGAGGGC
CGCTTCGAGC CGCGCGAGGT CAAGGTCGGC GCCCGCGGCG AGGGCTACAC CGAGATCCGC
GAGGGTGTGC AGACCGGCGA GCAAGTCGTG ACCGCGGCCA ACTTCCTGAT CGACGCTGAG
AGCAACCTGA AGGCGGCGCT GCAGAGCATG GCGGCGCCCA AGTCCCCCGC CGAGCCCCAG
GTGCAGGCCG AGGATAAGCC GCAATGA
|
|---|
| Protein sequence | MDQTTPFHLA RQRDRAPSGG RAKAWIAGLV LLPLAVAGGA LAGLRTGEAG WPLPSWLPSS
VSSLLAGRGT QPSAAAGVPI LYYRDPDKAL YAQAPAKTPD GRDYLPVHLG EDVDFELRPA
AAKGAEANAT YAARPDETRK ILYYRNPMGL PDTSPVPKKD SMGMDYIPVY EGEAEEGNTV
KISPGKVQRT GVRSERAERR VVSRAVRVPG TVTLDERRVT VVATRSDAYV DHVENVTTGD
RVRKGQPLVH VYSPEINAAA AQLIANPGFD GARRRLQNLN VSEEVINEME RIRKVPMAIT
WTSPRDGLVL QRTAVEGMKA AAGDTLFRIG DISTLWVLAD VPEYDLGSVK VGQPVSVRVR
SLPGRSFTGK VGLIYPQVNT QTRTTRVRIE LPNPDGVLLP DMYADVEIGT GATKPVVAVP
NDAVIDTGAR QVVLVDKGEG RFEPREVKVG ARGEGYTEIR EGVQTGEQVV TAANFLIDAE
SNLKAALQSM AAPKSPAEPQ VQAEDKPQ
|
|---|
| |