| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mchl_0621 |
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| Symbol | |
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| ID | 7115437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methylobacterium chloromethanicum CM4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011757 |
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| Strand | - |
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| Start bp | 615735 |
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| End bp | 617735 |
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| Gene Length | 2001 bp |
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| Protein Length | 666 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 643523414 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_002419471 |
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| Protein GI | 218528655 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.06387 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAACGA AGGCAACCGA GCGGGACGAT GCGGACGCCG CCCAGGATCA ACCGACGGAC
GGCCCGCTCC TTGACCTGAC GGATGCCGCC GTCAAGCGGA TGGTCAAGCT CGCGAAGAAG
CGCGGCTACG TCACCTACGA AGAGATCAAC GAGGTCCTCC CGGACGGTCA GGTCGACGGC
GACCAGATCG AGGACGTGCT CGCGCAGCTC GACGACATGG GCATCCGCGT GGTCGAGGCG
GAGGAATCCG AGGAGGCTGC CCCCGAGGCC AAGGCCAACG GCGAAGCCTC CGAGGAGGAG
GAGAGCACGG AGGGCGGAGA GGTCGCCGAG ACTTCCGGCA CCCGCGCCGT CGCGGTAGCG
ACCCCCACCA CCCGCGAGCC GACCGACCGC ACGGACGATC CCGTGCGGAT GTACCTGCGC
GAGATGGGCT CGGTGGAGCT GCTCTCGCGT GAGGGCGAAA TCGCGATCGC CAAGCGCATC
GAGGCCGGCC GCGAGGCGAT GATCGCAGGT CTCTGCGAGA GCCCGCTGAC CTTCCAGGCC
ATCATCATCT GGCGCGACGA ACTCGTCGAC GGCAAGGTGC TGCTGCGCGA CATCATCGAT
CTCGAAGCCA CCTATGCCGG CCCCGATGCC CGCGGCGCGC CGCAGGAAGC GGAAGCCGAG
GGTGAAGAGT CGGAGGAGGC CGAAGGCGCC GTCCCGCCGG AAGGCGCCGA CGACGAAGAC
GACATGGAGA ACAACGTGTC GCTTGCGGCC ATGGAGGCCG AGATCAAGCC GCGGGTTCTC
GAAACCTTCG ACAACATCGC CTCGAACTAC CGCAAGCTGC GCAAGCTCCA GAACGAGGAG
ACGGAGCTGA AGACGGGCGG CGGCACCGTC ACCTCCGCGC AGACCAAGAA GCAGGCCGAG
CTGAAGGACA TCGTCGTCAC CGACGTGAAG TCGCTCTCGC TCAACGCCAA CCGCATCGAG
GCCCTGGTCG AGCAGCTCTA CGACATCAAC AAGCGCCTCA TCTCGCATGA GGGCCGCCTG
ATGCGCGCCG CCGAGCACCA CGGCGTCGCC CGCGACGAGT TCCTGCGCCA CTACCAGGGC
TACGAGCTCG ACCCGAACTG GATGGACCGC GTCGCCACGC TGGGCGGCAA GGGCTGGAAG
AACTTCGTCG AGCGCGGCGG CCGTCAGGTC GCGGACCTGC GCGAGCAGAT CCTGACGCTC
GCCTCCGAGA CCGGCCTGCA GATCGGCGAG TACCGCAAGA TCGTCGCCAT GGTGCAGAAG
GGCGAGCGCG AGGCCCGCCA GGCGAAGAAG GAGATGATCG AGGCCAACCT CCGCCTCGTG
ATCTCGATCG CCAAGAAGTA CACCAACCGC GGCCTGCAGT TCCTGGACCT GATCCAGGAG
GGCAATATCG GCCTGATGAA GGCGGTCGAT AAGTTCGAGT ATCGCCGCGG CTACAAGTTC
TCGACCTACG CTACGTGGTG GATCCGGCAG GCGATCACCC GCTCGATCGC CGACCAGGCG
CGCACGATCC GCATTCCGGT GCACATGATC GAGACGATCA ACAAGATCGT CCGCACGTCA
CGCCAGATGC TGCACGAGAT CGGCCGCGAG CCGACTCCGG AGGAGCTGGC CGAGAAATTG
GCCATGCCGC TGGAGAAGGT GCGCAAGGTC CTGAAGATCG CCAAGGAGCC GATCTCCCTC
GAAACGCCGA TCGGCGACGA GGAGGATTCG CATCTCGGCG ACTTCATTGA GGACAAGAAC
GTCGTCCTGC CGATCGACGC GGCGATTCAG TCGAACCTGC GCGAGACCAC GACCCGTGTG
CTCGCCTCGC TGACGCCGCG CGAGGAGCGC GTGCTGCGCA TGCGCTTCGG CATCGGCATG
AACACCGACC ACACTCTCGA AGAGGTGGGT CAGCAGTTCT CGGTGACCCG CGAGCGCATC
CGCCAGATCG AAGCGAAGGC CCTGCGCAAG CTCAAGCATC CGAGCCGGTC GCGGAAGCTG
CGAAGCTTCC TCGACAACTG A
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| Protein sequence | MATKATERDD ADAAQDQPTD GPLLDLTDAA VKRMVKLAKK RGYVTYEEIN EVLPDGQVDG
DQIEDVLAQL DDMGIRVVEA EESEEAAPEA KANGEASEEE ESTEGGEVAE TSGTRAVAVA
TPTTREPTDR TDDPVRMYLR EMGSVELLSR EGEIAIAKRI EAGREAMIAG LCESPLTFQA
IIIWRDELVD GKVLLRDIID LEATYAGPDA RGAPQEAEAE GEESEEAEGA VPPEGADDED
DMENNVSLAA MEAEIKPRVL ETFDNIASNY RKLRKLQNEE TELKTGGGTV TSAQTKKQAE
LKDIVVTDVK SLSLNANRIE ALVEQLYDIN KRLISHEGRL MRAAEHHGVA RDEFLRHYQG
YELDPNWMDR VATLGGKGWK NFVERGGRQV ADLREQILTL ASETGLQIGE YRKIVAMVQK
GEREARQAKK EMIEANLRLV ISIAKKYTNR GLQFLDLIQE GNIGLMKAVD KFEYRRGYKF
STYATWWIRQ AITRSIADQA RTIRIPVHMI ETINKIVRTS RQMLHEIGRE PTPEELAEKL
AMPLEKVRKV LKIAKEPISL ETPIGDEEDS HLGDFIEDKN VVLPIDAAIQ SNLRETTTRV
LASLTPREER VLRMRFGIGM NTDHTLEEVG QQFSVTRERI RQIEAKALRK LKHPSRSRKL
RSFLDN
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