Gene Mchl_0172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMchl_0172 
Symbol 
ID7117655 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethylobacterium chloromethanicum CM4 
KingdomBacteria 
Replicon accessionNC_011757 
Strand
Start bp170836 
End bp171366 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content68% 
IMG OID643522979 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_002419046 
Protein GI218528230 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0627094 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCGATA TGATCCGCCT CATCGAGCCG CTCATTCCGG CCCTGCGCCG CTATGCCCGC 
GCGCTCCTGC ACAACCCGAC CGATGCGGAT GACCTCGTCC AGGATTGTCT CGAGCGCGCC
ATCGGCCGGT GGCATCAGCG CCGGGCCGAC GGTGACGTAC GCACCTGGCT CTACGCTATT
CTTCACAATC TCGCCGTCAG CCAGATGCGC CAGCGCGCGC GCCGCGGCTC GTCCGTGGCC
GTCGAGGATG CGCCGGAGGC GACTTTGGCC GTCGCCCCGA ACCAGGACGA CGGCCTGCTC
CAGCGCGACG TGACGGCGGC TCTCGACGCT CTGCCGGAGG AGCAGCGCGG CGTGCTGCTC
CTCGTAAGCG TGGAGGGGCT CTCCTACGCT GAGGCGGCGC AGGTGCTCGC CATCCCCATC
GGAACCGTGA TGTCGCGTTT GTCGCGGGCG CGCGACCGGA TGATCCAGAT GATCGACGGT
GAGAGTGCGT CCGCTCCCGT CAAACATCCG CTGCTCAGGA GGGTGAAGTG A
 
Protein sequence
MSDMIRLIEP LIPALRRYAR ALLHNPTDAD DLVQDCLERA IGRWHQRRAD GDVRTWLYAI 
LHNLAVSQMR QRARRGSSVA VEDAPEATLA VAPNQDDGLL QRDVTAALDA LPEEQRGVLL
LVSVEGLSYA EAAQVLAIPI GTVMSRLSRA RDRMIQMIDG ESASAPVKHP LLRRVK