| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_5628 |
|---|
| Symbol | |
|---|
| ID | 7112955 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011738 |
|---|
| Strand | - |
|---|
| Start bp | 1762 |
|---|
| End bp | 5199 |
|---|
| Gene Length | 3438 bp |
|---|
| Protein Length | 1145 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 643483925 |
|---|
| Product | P4 family phage/plasmid primase |
|---|
| Protein accession | YP_002380934 |
|---|
| Protein GI | 218442614 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3378] Predicted ATPase |
|---|
| TIGRFAM ID | [TIGR01391] DNA primase, catalytic core
[TIGR01613] phage/plasmid primase, P4 family, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.000000000865428 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGTAA CAACTCATAA GCCTTCATTC AAACAGCATA AGAATTCTGG GTCATTAATA
GAGACTTATA ATGAGGCGAT CGCGGTTCTT ACCCCAGAAC AAATATACGA TCGCTACCCC
CATAACTTCA AATCCGACGC AACCGGGAAA TTAAGAGGAA TTCCGCCGTT TCGTGAGTCT
AAGTCAGGAA CATCCTTTAC AGTGTTTCCA GATGGGGGAT TTTTTGACGC TGGCGACGGG
TTCGCCGGTT CCCCGGCTGA TTACATTCAC AGTATGAGAG TCGGGAGGTG GGAAAGAGCC
AGAAAAGCCG ATTTTGTAGC GGCGGTTAGA GAGTTATGCG AACTTGGCTC AATCCCTTTC
CCAGAGCGTG ACCCAAGTCC ATCTGAAATC GAAAAAGCGG TCAAAGAGGA GACAAGGAGG
GCAATTTTAA GAGAAACCAT TAAGATTTGT TCTGATTTGT TGTGGAGTGA ATTTGGAAGG
GAGGCTCGTC AATATCTCAT AACAGAACGG GGATTAACGG AGCAACAAAT CAAGGATTTC
AACTTGGGAT ATTATCGTAA AAGAGCGGAT CTAGTTGATT ATCTTAAGCA TAAAAAATTC
AGCGCATCAG AAATTAAGGG GGCTGCGGTG GCATTAACAT CATGGGAAGG ATATATAATA
ATTCCTTGGT TGGATGAAAA TGGTCGAGTT TTGACTTTAT ACGGACGTTA TTCTCAAAAA
ACAGCGCCCG AAGGGCGACC CAAAACTTTA GCCTTGCCTG GAATCTCCAC CAAGAGAGCG
CCATTGTATC TAGATAGAGC GATCGCATCT AATCATAGAG AAGTGATTTT CGTTGAGGGG
GTGTTCGATG CCCTACTCTT ACAAGCATTG GGAGAAACGA GAGCAGTTAG TGGAGTGGCC
GCGTCATTCT CTAACGAGCA GATAGAATGT CTCAAGCGCA ACCGAATTGA GAAAGTATAT
CACCTCGGAG ATCCAGACGG CGGGGGAATT GGAGGGACTA ACTCGAATTT AATGCGGCTG
ACCAGAAGTG GGATAAGTGT CTACGTCCCC CCAACCTTGC CGGACGTATT AGACCCCGAT
GAATTCGTCT TACGTAAGGG AATTACAGCC TTAAAGCAGC TTTTAGAGCA ATCCGAACAC
GGATACAGGT GGAAGGCCAA ACAAATTGTA GCTGAACATG GAAACGATAG TGATGAGGCG
ATCGAGAAAA TTTTCTCGAT CGCTGTTGCT TATTCCCGGA CAATTCCATC TCAATACAAA
TTAGAAGAAG AAACCTTCTT TTGGGCAACT ATTAGGAATA GTTTGGGGGA ATTAGACCCC
GAAGCATTCC GAGCTAAATT AAAAGCGCGT TATGGAGATA CTCCCTCCAT CCCTACTAAA
AGTGGCCAAG ATTTAAAAGT TCCGGACTGG GCCCAGTCAT CGATCGCCAA ATGGTTAGCC
GAACGTTACC GTCCTTTACT GGCTTTCAAT ACGGATATAG AAGAATGGTT CAGATATTCG
GCTATTAATG AGGGAATTTG GACTAAAGAC CCTAAATATT ATATCTGGCA AATTATCATA
ACCGAATTAG AAACCTTAGC GGATATTCAC GAGCAACTTC ATGAGAAGAA GAAACGGCCT
AAATATGGTT CGGGATTTAT CTCAGGGATA GAAATGTTGC TCAAAGCCTA CTTGCCGGTG
AGGGGATGGG ATGAACAACC TGGATTATTG CCTTTTATCA ATGGAGTGAA AAATCTCACT
ACAGGGGAAT TTGTCCCCCA TGCTCCAGGA TTCAGATTAA CGTGGTGTTT ACCTTATGAG
TATAGCCCAG GTGCTACTTG TGAGCCTATC CTTGATTGGC TTCACTCTAT GACGAATGGG
GATGAAGCGA TCATCGAATT TATACGGGCC CATCTAAATG CGATTATTAC GGGGCGTAGC
GATATTCAGA GTTATTTAGA ACTCATTGGC CCAGGTGGAA CCGGTAAGGG GACATTAACC
CGATTGGCCA GTGCTTTAAC TGGCGATCGC AATACAGTCA GCACTACACT CCGCAACTTA
GAAGAAAACC GTTTTGATAC CTCCAGATTA TATCAAGCCC GGTTAGTAAT AATTACTGAT
GCTGAGAAAT GGGGAGGAGA CGTATCGGTA TTGAAGGCGA TCACCGGTGG CGATAAACTG
AGGTTCGAGC AAAAATTCAA GCAGCCCCTC GATGGGTTCT ACTACAAAGG TCGTGTGATG
ATTTGCGCCA ATGAGCCGAT CCAGTCTGCC GACTATACAT CGGGTTTGGA ACGTCGCCGC
CAAACTGTTT ACATGACCAA TAAAATCCCC TTAAAATCTC AGAGAAAACT GATCGAGTTG
AGTAATTCTG GGGTGGAAGG GGAATTCGTG CCCTATTTGC CTGGATTGAT GAACTGGGTA
TTGGATATGT CCCCAACTGA TGTTGAGAGG ATTATCAGAG AAACCCCTAC GGCACATCAT
CAATTTCAAT ATTATAAAGC GCAAATCCTC ACCGAAACTA ACCCTATAGC TGACTGGTTA
GATACTTCAG TTGTAGTACG ACCCGATTAC CGAACGGCGA TCGGGGTAGC CAGTCGTGAT
AAATCTTCAG AGAGTCCCAA TTGGTATCTA AACACAGACC GATGGTTATA TGCCAATTAT
GCGGAGTATT GTCATGGGAG TGGGGCTAAA CCGGTGTCTG TTCGTCGATT TGTTAATTTA
CTCCATGATT TAGCGGTTAA TCAGTTGAAT TTGAAAGTCA CTAAAGGACG CGATCGCATG
GGGTCTTATG TGTTGGGATT AAAATTGCGA TCGCCCGATG ATGATGATCC GTTAATTATA
AGTGGATCAA TCCCAAACGA TCCCCCATCA CGTCCTGATA AACCATTAGG AGGTTCTCCT
AATCCGGGCT GTGATGGCAA TGTGATAGAT GGGGGTGATG CCCAAACTCC TAGTAGTGAT
GGATATGATG AATGCGATGG CAAATTTGAG GGGTTGGACA GTCTCGACAA AAACGAAATT
AAAAAAGTTA AAAACGAGAA AAAAGGAACT TTGGGTAAAT CCGATTCTGT GCAGTCATCG
CCATCACCAA AAACGTCTCA AAGACTTACC GGTGATGGAA ATAAGCCACC CGTCTCCAAT
AATGTCGCCA GGGATGGATC TCAGGAGGAA AAAAGCTCTA AAAGCCCTGC CAGTGATGGA
TCACAGGAGA CAAATAAGAG AGAATCGGGG GAAACTTCTC AATCGAAAAA TCCTAAAATC
ACTCCGGCTC CTAAATACGA GATTGGCGAT CGTGTGGATC GCTATAACAG CGTACATGAA
TGTTGGCATA CAAACGTTGC CGTAAAGGGA CGGTATTTTA AAGGAATAGA ATGGGTTTAT
GTTCTCGATG ATTGCTGGCA AAGTCGGATT TTTGAACGCT ATTTAAGACC GGCCCAAACC
GTTAACAGTA AACAGTGA
|
|---|
| Protein sequence | MLVTTHKPSF KQHKNSGSLI ETYNEAIAVL TPEQIYDRYP HNFKSDATGK LRGIPPFRES
KSGTSFTVFP DGGFFDAGDG FAGSPADYIH SMRVGRWERA RKADFVAAVR ELCELGSIPF
PERDPSPSEI EKAVKEETRR AILRETIKIC SDLLWSEFGR EARQYLITER GLTEQQIKDF
NLGYYRKRAD LVDYLKHKKF SASEIKGAAV ALTSWEGYII IPWLDENGRV LTLYGRYSQK
TAPEGRPKTL ALPGISTKRA PLYLDRAIAS NHREVIFVEG VFDALLLQAL GETRAVSGVA
ASFSNEQIEC LKRNRIEKVY HLGDPDGGGI GGTNSNLMRL TRSGISVYVP PTLPDVLDPD
EFVLRKGITA LKQLLEQSEH GYRWKAKQIV AEHGNDSDEA IEKIFSIAVA YSRTIPSQYK
LEEETFFWAT IRNSLGELDP EAFRAKLKAR YGDTPSIPTK SGQDLKVPDW AQSSIAKWLA
ERYRPLLAFN TDIEEWFRYS AINEGIWTKD PKYYIWQIII TELETLADIH EQLHEKKKRP
KYGSGFISGI EMLLKAYLPV RGWDEQPGLL PFINGVKNLT TGEFVPHAPG FRLTWCLPYE
YSPGATCEPI LDWLHSMTNG DEAIIEFIRA HLNAIITGRS DIQSYLELIG PGGTGKGTLT
RLASALTGDR NTVSTTLRNL EENRFDTSRL YQARLVIITD AEKWGGDVSV LKAITGGDKL
RFEQKFKQPL DGFYYKGRVM ICANEPIQSA DYTSGLERRR QTVYMTNKIP LKSQRKLIEL
SNSGVEGEFV PYLPGLMNWV LDMSPTDVER IIRETPTAHH QFQYYKAQIL TETNPIADWL
DTSVVVRPDY RTAIGVASRD KSSESPNWYL NTDRWLYANY AEYCHGSGAK PVSVRRFVNL
LHDLAVNQLN LKVTKGRDRM GSYVLGLKLR SPDDDDPLII SGSIPNDPPS RPDKPLGGSP
NPGCDGNVID GGDAQTPSSD GYDECDGKFE GLDSLDKNEI KKVKNEKKGT LGKSDSVQSS
PSPKTSQRLT GDGNKPPVSN NVARDGSQEE KSSKSPASDG SQETNKRESG ETSQSKNPKI
TPAPKYEIGD RVDRYNSVHE CWHTNVAVKG RYFKGIEWVY VLDDCWQSRI FERYLRPAQT
VNSKQ
|
|---|
| |