| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_5502 |
|---|
| Symbol | |
|---|
| ID | 7112717 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011737 |
|---|
| Strand | + |
|---|
| Start bp | 154549 |
|---|
| End bp | 157293 |
|---|
| Gene Length | 2745 bp |
|---|
| Protein Length | 914 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643483881 |
|---|
| Product | DEAD/DEAH box helicase domain protein |
|---|
| Protein accession | YP_002380890 |
|---|
| Protein GI | 218442569 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.445906 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAAGC CAATAGATCA CGCCGCCTTA AGAAAAGCTG CACAATCTGC CCCTCCATTG
TACCCAGACT GGTTAGATGT GGGAAAGTTG GTATATTCCA ACAAACATCA ATGCCATGCT
CAAGTTTTGG GGTTCTTAGA CCGAATTGTC AATCTAAAAA TCAACGGCAA AACTCATCAA
GTAGACTTAG ATTCTCTTGC TGCCCCAACT ATTGAGATAA GCTCATCAAT TGATCTCGGT
CTTATTAATC ATGGCACTTA TCGGGCGCTC GCGTCCGAGT GGTTAACCGA TTTGAGTGCT
GTCAAAATTT TGCCGGAGAA TGAGGCTATA AAGGGAGGAT TTCCCGATGA TCTAGCTCCT
GATTTAACCG GGGCACTTAA AGCTACAGGA ATTAAGGAAT TTTATTCACA TCAATTAAAG
GCTTGGCAAC AATTAAAAGC AGGGAAATCA ATCACTATCA CTACCGCTAC AGCATCAGGT
AAAACAATGG CTTTTACTCC CTATGCTTTT GAGTTAGCCG CATCAAAGAA AAGAACCACC
TTATTAATTT ATCCCTTAAA GGCACTAGCC GCAGATCAGT ATAAAAAACT GATAAAGCTT
AACGAAGCTT TACCGCCTCC CTCACGGTTA TTAATAGCTC AATGTACAGG GGATATTGCC
TTAGAAGTTC GTAAAGCTTA TTTTACAGAG GGGAAATGTC CTGATATTAT TCTGATGTCG
CCGGATGTGT TGCACTATCA ATTGTTTCAT AGCAACAATC CTAAAATGTA CCTGTGGCAA
GAGTTTTTAT CTAGACTGGA GTTAGTTGTT ATCGATGAAG CTCACTCCTA TATCGGGTCT
TTTGGAATAC ATTTTGCCAA TGTGATACGC AGACTTAGAC TAGCTTGTGA AAATGTGAGA
AATACTCAAC AGCTACAGTG GGTGATTTCA ACAGCGACGA TTTCTAATCC TGTGGAATTA
GCCTCTACTT TGACAGGGTT GCCACCTGAA AAAATCACCT TAATAGAACG CTCAGGGGCA
TTAACTCATG AGAAAACCCT GTTGGTACTC TCTCCTCAAA GTGCCCCCAA TTTTACTACA
ACAACAATGA TTCGCTCTTT ATTGAGTTAT GGATTGTCAG GTTTAGTTTT TGTTAATTCT
AGGGCTACCG CCAAAAGCTT AATTTCTCTA GTTCGTTATC AGATGGGGGG CTATTGTTCG
GAAATAGAAC TTTTTTATGG TTCTATTTCA GCAGCAAAAA GAACAGAATT AATTAGTAAA
TTAAGCCAAA AAAAACTTAA AATTTTGATA ACAACCTGTT GTTTGGAAGC GGGAGTCGAT
TTACCCGCTC TCGACTTTGT GATCATTCGA GGGGCGACAT CACTTAATAG CCTGTGGCAG
AGAGCAGGAA GGGCAGGACG CTCTACACCG GGATTGATAG TTTTTGTACC AGACGGGTCG
AATCACATTG ATTATTATTA TAGTACCCAA CCCGATCGCT TGTTCGCTCC TGTCGAGAAA
ATTAAATTAC AACCCAATTA CCCTCCTGTA TTGGCGAATC ATCTTTTATG TGCGGCAACT
GAAGGGGGAA TTCCCTTGGG GAGCGTTTCT CATTATTTCG GTGAAACCTC AACAGTAATC
AGTGCTGAGT TAATCAAACA GAACCAATTA TTTTGGACAA CGAACCAGGT TTTAGTTAGG
AAAGGTTTTC CCCATAAAAA TATTTCACTT AGAGGAATTG TTGATGAAAA AGTGAAGTTA
ATTGATTCTG ATACCGGAGA AATTTTTGAG GAAATGGGCT TAAACTTCGC CCATCGGGAA
TGTCATCGTG ATGCACTTTA TATCACGTCA GAAGAAGGAG AAACAGTAAT CCGCCGATGT
CTTTTTTTAG ATTTAAATCT CCATCGTGCT ATTCTCAAAA AAGTCGAGTT ACCCAATAAT
CGGACTCAAC CAATTGTCGA ATTTGATATT TCAACTCAAT CCCGATTAGA ATCGCCTAAA
ATTATTCCGA GTACCATCAA TAAAGGAAAT ATAAGAGCTT CTTTATGGTG GGGAACGATT
TCATCTCAAG TAGAAGGATA TCGAGAATTT GAGTTAATTT ATGCGCCTGT GTGTACTAAC
CCTAGTTGTA TCCAATATAA ACAGCCTCAA AAGGAGAAAA ATAAATGTAG TCGCTGCCAC
AGAAAATTAT CTGAACGTTT AACTCAAAAA TTAAAGGCAG AAATCCCGTT TCCCCCACTA
ATTACCTCTT ATTCAGCACC TATTTTAAGA ATAGAAATCA ATTCTCCTCT CACTCACAAA
ATTTTTGAGC AAAGCGAATT GATAAAAAAA GAACTCCTAG CCACTTTTGG GGATGTCGAA
GCTGTCCCAG GATTATTAGG CTCGATTTTC ACCACCAATC CAGTCCGAGT AGCACTTCAT
TCCCTGACTC ATTTATTGGA AAAATCTGTC CCCCTCTTAT TTTTAGCATC TGATAAAGAT
GTTAGTTCAT TGGTTATTGA ACGACAATTA GACAGAGAAA TAAAAAGTAA TGCTCATCCT
TTAGTCGCTT ATATTTTCGA CAGTAATCAT GAAGGAAATG GGACGAGTGA AGCCATTTTT
TCCGATTGGG ATAATTGCAT TGCTAAAGCT CATGAATTAG CAATAGGCTG TGATTGTGCT
GAGTCTGGTT GTCCTAAATG TCTAACCTCT CACGGATGCC CCGAACTCAA TCAAGATCTT
CATAAACCTT TAGGACTTTG GTTGCTGGAA CAATTACTTA AATAA
|
|---|
| Protein sequence | MSKPIDHAAL RKAAQSAPPL YPDWLDVGKL VYSNKHQCHA QVLGFLDRIV NLKINGKTHQ
VDLDSLAAPT IEISSSIDLG LINHGTYRAL ASEWLTDLSA VKILPENEAI KGGFPDDLAP
DLTGALKATG IKEFYSHQLK AWQQLKAGKS ITITTATASG KTMAFTPYAF ELAASKKRTT
LLIYPLKALA ADQYKKLIKL NEALPPPSRL LIAQCTGDIA LEVRKAYFTE GKCPDIILMS
PDVLHYQLFH SNNPKMYLWQ EFLSRLELVV IDEAHSYIGS FGIHFANVIR RLRLACENVR
NTQQLQWVIS TATISNPVEL ASTLTGLPPE KITLIERSGA LTHEKTLLVL SPQSAPNFTT
TTMIRSLLSY GLSGLVFVNS RATAKSLISL VRYQMGGYCS EIELFYGSIS AAKRTELISK
LSQKKLKILI TTCCLEAGVD LPALDFVIIR GATSLNSLWQ RAGRAGRSTP GLIVFVPDGS
NHIDYYYSTQ PDRLFAPVEK IKLQPNYPPV LANHLLCAAT EGGIPLGSVS HYFGETSTVI
SAELIKQNQL FWTTNQVLVR KGFPHKNISL RGIVDEKVKL IDSDTGEIFE EMGLNFAHRE
CHRDALYITS EEGETVIRRC LFLDLNLHRA ILKKVELPNN RTQPIVEFDI STQSRLESPK
IIPSTINKGN IRASLWWGTI SSQVEGYREF ELIYAPVCTN PSCIQYKQPQ KEKNKCSRCH
RKLSERLTQK LKAEIPFPPL ITSYSAPILR IEINSPLTHK IFEQSELIKK ELLATFGDVE
AVPGLLGSIF TTNPVRVALH SLTHLLEKSV PLLFLASDKD VSSLVIERQL DREIKSNAHP
LVAYIFDSNH EGNGTSEAIF SDWDNCIAKA HELAIGCDCA ESGCPKCLTS HGCPELNQDL
HKPLGLWLLE QLLK
|
|---|
| |