| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_5136 |
|---|
| Symbol | |
|---|
| ID | 7108035 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011729 |
|---|
| Strand | + |
|---|
| Start bp | 5701535 |
|---|
| End bp | 5704228 |
|---|
| Gene Length | 2694 bp |
|---|
| Protein Length | 897 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 643483345 |
|---|
| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_002380354 |
|---|
| Protein GI | 218442025 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.000000000208588 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGAAC AATCTCCTAT AAGATCATCT TCCCAATTAG ATTCATCATT TCCATTACGT
CTGTTAATTA TAGAAAACTC ACCAGAAGAT GTAGAATTAA CCGTCTTGAC GTTAGAAAAT
GCAGGGATAG TTTTTACCTA TGATGTCGTG GAAACTCAGT TCCACTGTGA GAAACACTTA
CGAGAAAATA CGTATAATGC TGTCTTAGCT GATTATCGAC TACCCGAATT TAATGGATTA
AATGCTTTTA AGTTATTACA AAATTCACAA CAAAATATAC CCTTTATTTT AGTCACTGGC
AGTTTGGGAG AAGAAGCAGC CGTTGAATGC TTAAAAGCCG GCATCACAGA TTATGTACTT
AAAGATCGAT TGTTTCGTCT CCCCAGTGTT CTAACTCGTG CTTTGGCAGA ATTTGAAATG
GAACGTCAGC GCACAGAAGC TATTAATAAG ATTAAAGTAT TGGCTTGGCG AGAAGGAATT
ATCAATCGGA TCGTTCAAGT CATCCGAGAA AAATTAGACA TCGAAACTAT TTTATCAACA
ACCGTTAATC AATTACATGA AGCTCTCCAA GTTAACCGGT GTCTTATTTT TATGCCTGAT
CTTCAACAAA AAATGTATGT AAAATATGTT AGTCATGCAA CTGGTGAAGG CAACCAATTA
GTAGGAATCT ATTGTTATTT TTATCAATAT TATCATCCTA ATTTAGCTCA AGGAGAAGCC
ATTGTTATCC CTAAAATTGA GGCGACTTTA CCCATTGAAC TCCAAACCAT AGCCAAAAAT
TATCAAATTT GTTCTGTTCT TTTGATGCCT TTACTATATC AGCAATCTTA CTTAGGAGGA
ATTGCCCTCC ATCAATGCGA TCGGCAACGA GAATGGACAG AAAATGAAAT CACCCTCGTT
AAAACCATTG CTCATCATTG TGCGATCGCT ATTCACCATA CACAACTCTA TCAACAGGCC
CAAATAGAAC TTGCACAACG TCAGCAAATA GAAACCGCAC TCAGACAACG AGAACAAAGA
TTTAAAGCTT TGATTGAAAA TGCGGCGGAT ATTATTATTA TCTTAGATGC TCAATTTTGT
TTTTCTTATC TTAGTCCTTC TATCAAAAAA GTTTTAGGGT ACTCTTGTGA AGAACTAATC
GGACAAAGTA TTTTAACTTT AATTCATGAA GATGAAGAGT TCGTATTTAG AGAAACCTTG
AATAAAGTGA TAGAAAATCC AGAAATTTCT GTGAGTGAAG TTGAATATCA TTTTCGCACT
CGTCATCATA CATGGTCAAT TATGGAAGGG GTGGTTAAAA ACCTCTTGAA TGAGCCTGGA
GTTGAGGGAA TTGTGCTTAA TTTTCATGAA ATAACGCAAC GCAAATTAGC TGAAGCTCAA
TTACGTCATG ATGCTCTCCA TGATAGCTTA ACAGGTCTTC CTAATCGGGC TTTATTAATG
GATCGGTTAA CTCAGGCTAT TAATAGAGAA AAAGGACGTT TTTATACTCA TTTTGCGGTA
CTTTTTCTAG ATGTAGATCG GTTTAAACTT TTAAATGATA GCCTAGGTCA TTTGGTCGGA
GATCAACTTT TAATTAGTTT TGCCAATTGC CTCAAAAAAA TTCGCCGTTT TACCGATACT
ATTGCTCGTC TTGGAGGAGA TGAATTTGTA ATTTTATTGG AAGACCTTTC TGAGGTTGGA
CAAGCCATTA AAGTGGCTCA AAGAATTAAT GAGATTCTCT CCTCTTCCTT TTTAATTGAC
GATCAAGAAA TTTTTATTAC TGCTAGTATT GGGATTGCAT TTAGTAATAG TTCTTATGAG
CATCCTAGCC AAATTCTTCG GGATGCTGAT ACTGCCATGT ATTATGCCAA AAATAATGGA
CGGGGAAAAT ATCAGGTCTT TGATTCATCA ATGCACATTC ATGCTTTGAA ACAATTACAA
TTAGAAAATG ATCTTCGCCG AGCAATTGAA CGAGACGAAT TAGTTGTTTA TTATCAACCC
ATCATTTGTT TAAAGAACGG GACTTTAATC GGAGTAGAAG CTTTAGTCCG TTGGCAACAT
CCTCAAGAGG GAATGATTTC TCCGGCAGAA TTTATTCCGA TTGCAGAAGA AACCGGTTTA
ATCATTGAGC TTGATCAATG GGTGTTAAAT ACAGCTTGTC AACAAATGCG CTTTTGGCAA
GAAAAATATT CTGATTTTAA GTCAATTACC CTAAGTGTTA ATCTTTCGGG AAGACAATTT
TCTCAACCAG ATTTAATTAA AAATATTGAT AATATTTTAA CTCAAAACAA GTTAGAAAAA
CAATATTTAA AACTAGAAAT TACTGAAACA GTTTTAATTG AAAATCCCAA CTCAGCAGCC
GAAATGTTAG AGCAACTAAT AGAGAGAAAA GTAACCGTTT GTTTGGATGA TTTTGGAACG
GGCTATTCTT CTTTAGGATA TTTGCACCGC TTTCCTCTCG ACGTTTTAAA AATTGATCGT
TCTTTTGTCA GTAACATAGA AACTAATACC TCTAATTCTA CGATTATTCG TACTATTATT
ACCCTAGCAA GAGAATTAGA AATAGAAGTC ATTGCCGAAG GAATCGAAAC CGAACAACAG
CGAGAATTTT TACAATCTTT AGGCTGTCAT TATGGACAAG GTTACTGGTT TTCTCCTCCG
GTTGACGGCA GAGAATTAAT CAGCTTAGTT AATCATAAAT CTAATCAATG GTAG
|
|---|
| Protein sequence | MSEQSPIRSS SQLDSSFPLR LLIIENSPED VELTVLTLEN AGIVFTYDVV ETQFHCEKHL
RENTYNAVLA DYRLPEFNGL NAFKLLQNSQ QNIPFILVTG SLGEEAAVEC LKAGITDYVL
KDRLFRLPSV LTRALAEFEM ERQRTEAINK IKVLAWREGI INRIVQVIRE KLDIETILST
TVNQLHEALQ VNRCLIFMPD LQQKMYVKYV SHATGEGNQL VGIYCYFYQY YHPNLAQGEA
IVIPKIEATL PIELQTIAKN YQICSVLLMP LLYQQSYLGG IALHQCDRQR EWTENEITLV
KTIAHHCAIA IHHTQLYQQA QIELAQRQQI ETALRQREQR FKALIENAAD IIIILDAQFC
FSYLSPSIKK VLGYSCEELI GQSILTLIHE DEEFVFRETL NKVIENPEIS VSEVEYHFRT
RHHTWSIMEG VVKNLLNEPG VEGIVLNFHE ITQRKLAEAQ LRHDALHDSL TGLPNRALLM
DRLTQAINRE KGRFYTHFAV LFLDVDRFKL LNDSLGHLVG DQLLISFANC LKKIRRFTDT
IARLGGDEFV ILLEDLSEVG QAIKVAQRIN EILSSSFLID DQEIFITASI GIAFSNSSYE
HPSQILRDAD TAMYYAKNNG RGKYQVFDSS MHIHALKQLQ LENDLRRAIE RDELVVYYQP
IICLKNGTLI GVEALVRWQH PQEGMISPAE FIPIAEETGL IIELDQWVLN TACQQMRFWQ
EKYSDFKSIT LSVNLSGRQF SQPDLIKNID NILTQNKLEK QYLKLEITET VLIENPNSAA
EMLEQLIERK VTVCLDDFGT GYSSLGYLHR FPLDVLKIDR SFVSNIETNT SNSTIIRTII
TLARELEIEV IAEGIETEQQ REFLQSLGCH YGQGYWFSPP VDGRELISLV NHKSNQW
|
|---|
| |