Gene PCC7424_4335 details

Gene Information

• Locus tag: PCC7424_4335
• ID: 7108257
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cyanothece sp. PCC 7424
• Kingdom: Bacteria
• Replicon accession: NC_011729
• Strand: +
• Start bp: 4809205
• End bp: 4811190
• Gene Length: 1986 bp
• Protein Length: 661 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 643482556
• Product: RNA-directed DNA polymerase (Reverse transcriptase)
• Protein accession: YP_002379570
• Protein GI: 218441241
• COG category: [L] Replication, recombination and repair
• COG ID: [COG3344] Retron-type reverse transcriptase
• TIGRFAM ID: [TIGR02646] conserved hypothetical protein TIGR02646

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 68
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCTAAAA CAGATTCCAA ATCGAATACT GTGGGATGTG GACAAGTCAG ACCGAAACTC 
CAGTGGAATC AAACCAACTG GAAACAACTG GAACGGCGCG TCTTTAAACT CCAAAAGCGG 
ATTTATCAAG CTGCTAGTCG TGGCAATGTT AGAACAGTTC GCAGACTCCA GAAGACCCTT 
TTACGCTCCT GGTCGGCAAA AATGCTTGCC GTCAGACGGG TAACACAAGA TAATCAAGGC 
AAAAAGACGG CAGGTGTGGA CGGCGTAAAA TCGCTAACCC CAAAGCAACG TATGAACCTT 
GTAGGACAAC TCAAATTGAC CTGTAAAACC AAGCCGACTC GTCGCGTTTG GATACCAAAA 
CCAGGAAAAG ATGAGAAACG TCCGTTCTTG ATACCATGTA TGTCCGACCG AGCATTACAA 
GCGTTAGTCA AAATAGCGTT AGAACCAGAA TGGGAGGCTA AATTCGAGCC AAACAGTTAT 
GGTTTCCGAC CAGGACGCGG ATGTCACGAT GCTATCGGAG CAATATTCAA CCAACTCGGC 
GCTAAAGCCA AATACGTGCT AGACGCGGAT ATATCCAAAT GCTTCGATAA GATTAACCAT 
GAAAAACTTC TCCAAAAATT AAATACCTTC CCCACCCTTC GCAGACAAAT CCGAGCTTGG 
TTAAAAGCTG GAGTGATGGA TGGAAACAAA TTATTCCCAA CCGAAGAGGG GACACCACAA 
GGAGGAGTGG TGAGTCCATT ATTAGCCAAT ATCGCCCTAC ACGGAATGGA AGAAATCATC 
AAATCATTTG CCCAAAACCC TGGAGAACTC AGACAGGAAT TTTCAAACAG AGGGAAAGGT 
AGAGAACAAT CAATCTCTCT AATAAGATAC GCAGATGATT TTGTCCTAAT CCATGAAAGC 
CTAGCAGTAG TGGAAAAGGG CAAAGAAATA ATTGAAACAT GGTTAAGAGA ATTAGGACTG 
ACCCTAAAAC CCGAAAAGAC CCAAATCACA CACACCTTAG ACAAACATCA AGGAAAGGTG 
GGATTTAACT TTCTAGGGTT TAACATCAGA CATTACAAAC GCAGTCGGCA CAAATCAATG 
AAAAACAATA AGGGTATAAG CTTAGGTTTT ACCCTAACAA TCAAGCCGAC GAGAGAGAAA 
GTCCTAGAAC ATTACAAAAA ACTTCGTGAC ATCGTGGATG CCCACAAAGC AATCTCCCAA 
ATTGTCCTAA TCTCAAAACT AAATCCAATA ATAAGAGGAT GGGCAAACTA CTACAATACG 
GTAGTAAGCA GTAAGGAAAA ATCCCTGCTA GACCACCTTT TATTTCTAAA ACTTTCAAGC 
TGGGCAAAGA GAAGGCATCC AAATAAAGGG GTTAAAGAAA TAATGGAAAA ATACTGGCAC 
ATCAAACAAT TAGGAAAATG GAACTTCTGC ACATTGAAAA ACGGAGAACC CGAAATACTA 
CTCCTAAAAC ATTCAGAAAT TCACCACAAA GACCATGTTA AGGTCAAAGG AAACGCCAGT 
CCATACGACG GAGATTTAAT TTACTGGAGT ACAAGAATGG GAGCAAACCC CCTGATGCCC 
ACGAGGATAT CAACACTCCT TAAAAAGCAA AAAGGGAAAT GCGCTCACTG CGGATTGTTC 
TTTAAAGAAG GAGATAAATT AGAAGTTGAC CACATCATTC CGAAGTCTTT AGGCGGAAGG 
GATGAATACA AAAACTGGCA ACTACTCCAT CGACATTGTC ACGATGAAAA ATCTACCCTA 
GATGGTAGTA TTGGCGCAAA ATCTGGCTGT AACAGTGCCA AGCCTAAACC ACAATCCATA 
TTTCCAGAGA ATTATCGATG GATTGATGAT ATGTTGGTGA GGGGCTGTGT CTGCCGTCGC 
ACGGCAGACC TTGTACGCCC CGTGTGCAGT GTACGTGACA AGTACCAATT AATTGAGGAG 
CGGAATGAGG CGAAAGTTTC ACGTTCCGTT TTGAAGACGA GTCAGAGAGG TGACTCTCTG 
GCTTAG 

 

Protein sequence

MPKTDSKSNT VGCGQVRPKL QWNQTNWKQL ERRVFKLQKR IYQAASRGNV RTVRRLQKTL 
LRSWSAKMLA VRRVTQDNQG KKTAGVDGVK SLTPKQRMNL VGQLKLTCKT KPTRRVWIPK 
PGKDEKRPFL IPCMSDRALQ ALVKIALEPE WEAKFEPNSY GFRPGRGCHD AIGAIFNQLG 
AKAKYVLDAD ISKCFDKINH EKLLQKLNTF PTLRRQIRAW LKAGVMDGNK LFPTEEGTPQ 
GGVVSPLLAN IALHGMEEII KSFAQNPGEL RQEFSNRGKG REQSISLIRY ADDFVLIHES 
LAVVEKGKEI IETWLRELGL TLKPEKTQIT HTLDKHQGKV GFNFLGFNIR HYKRSRHKSM 
KNNKGISLGF TLTIKPTREK VLEHYKKLRD IVDAHKAISQ IVLISKLNPI IRGWANYYNT 
VVSSKEKSLL DHLLFLKLSS WAKRRHPNKG VKEIMEKYWH IKQLGKWNFC TLKNGEPEIL 
LLKHSEIHHK DHVKVKGNAS PYDGDLIYWS TRMGANPLMP TRISTLLKKQ KGKCAHCGLF 
FKEGDKLEVD HIIPKSLGGR DEYKNWQLLH RHCHDEKSTL DGSIGAKSGC NSAKPKPQSI 
FPENYRWIDD MLVRGCVCRR TADLVRPVCS VRDKYQLIEE RNEAKVSRSV LKTSQRGDSL 
A