| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_3579 |
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| Symbol | |
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| ID | 7112192 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Cyanothece sp. PCC 7424 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011729 |
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| Strand | + |
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| Start bp | 3987725 |
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| End bp | 3989494 |
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| Gene Length | 1770 bp |
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| Protein Length | 589 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 643481817 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_002378837 |
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| Protein GI | 218440508 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.602098 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTCAAA TGAATGGACA TAACGGGAAC GGCCATTACT CTAATGGCCA TCATGCCAAT
GGTAACGGTA ACGGTAACGG TAACGGCCAC AAGTCAGGAA TGATAACCAC TGCACCGAAA
CCTGAAATTA AAGATTCTCA GTCTTTTAAT TTTCTTCCTT CTTTTACTGC TCCCGAAAAA
GGGGTGGTTT TGCGTCAATC TCCCACATGG TCTAGGGGAG TCGTTTGGAC GATTGTGGGT
GTAACGGTAG CAGCTATCAT TTGGGCGGCG GTAGCCCCCA TAGAACAAGT TGTACAAGCC
ACCGGACAGC TAAAACCCCA AGGAAAAGTC AAAGAAGTTC AAGCTCCGGT TAATGGAGTG
GTTAAAGAAG TTTTGGTTAA AGATGGGGAA AAGGTAGAAA AAGGAGAAGT TTTAGTTATT
TTTGATACTG AGGCTTCTAA GGCAGAATTA GCCTCTTATA AACAGATTCG TCAAGCTCTC
CAGCAAGAAA ATCAATTTTA TCAAATGTTG ATGGAGGAAA ATCTCGATCC TTCTCAAGTA
GAAACCGCAA TTATTCAGTT AAAATTGCCG AAAGAAGTGG CAACGTTAGC CCGAAATCGC
ATCGCCTTAA TGGCAGAAAA TCAACTCTTT CGGATTCAAG TCGGGGAATC TGTTGCCAAT
GCTGCCCTCG ATCGAGAACA ATTTGCTCGT CTTGAGGCAG CTAGGAGAGA ATTAGACTCT
AGAGCTTTGG CGGCTAAATT AGAAATTAAT CAATTGCAAA AACAACTCAG TCAAACTCAA
GTTCAATTGG CAGATGCAGA AAGTCAATTA GTCGCCGATC GTTTAGTTTT ACAAGAGATT
AAAACTCGCA ATGAGGATTT ATTGCAACAA TCTCAAGCCA GTTTAAAAAT TGAGCAACAA
ATTCTCAGTG AAATTTCCCC ATTAGCAGAA GAAGGGGCTT TAGCTCGCTA TCAAATTAAT
AAACAGCAAC AATCGGTCAA CGATCGCATT GCGGATATTG TAGAAAAACA AGGCAATGGA
GAGATTGAGT ATAAAAAACA ATTGCAACAA ATTGAGACTC GTATAGCGGA AATTCAACGG
TTTCAAGAAG AAGAACAAAG ACTTCAAGCC GCAATTTCTC AGGCTAGAGA AAGATATATG
AATACTCAAG CGGTGACGGA AAAAGATGTG CGGGATAGAA TCGCTGAAAA CAAAAAACGC
ATGGCTGAAG TTGATAGTCA GTTAACTAAA ATTATCGTCG ATAATAGAAA TCGAATTGCT
GAATACGATA GTCAAATTAG TCGAGCGAAC CAAACCTTAA GATATCAAGA ATTAAGAGCG
CCTGTAGGGG GAACAGTGTT TGATTTACAA GCTTTTCCGG GCTTTGTTCC TCAACCTTCT
CAAGCGGAAG CTCTCCTCAA AATCGTTCCT GATGACTATT TAATTGCTGA GGTCGATGTG
ATCAATAAAG ATATTGGTTT TGTTCGCAAT GACATGAAAG CTGATATCAG AATTGATTCT
TTTCCGTTTA GTGAATACGG AGATATTAAA GGAAAAGTGG TTTCTATTGG CTCAGATGCT
TTACCTCCTG ATGAAATTTA TAAGTATTAT CGATTCCCGA CTAGAATTCA ATTAGATGAT
CAATTCCTCA AGATCCAGAA TAGAGAAATT CCTTTACAAT CAGGGATGTC TATCAGTGCC
AACATTAAGA TCCGGGAAAA TCGCACTGTG TTGAGTCTGT TTACTGAACA ATTTACCCGC
AGTGTCGAAT CTCTTAAAAA AGTGGATTAA
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| Protein sequence | MSQMNGHNGN GHYSNGHHAN GNGNGNGNGH KSGMITTAPK PEIKDSQSFN FLPSFTAPEK
GVVLRQSPTW SRGVVWTIVG VTVAAIIWAA VAPIEQVVQA TGQLKPQGKV KEVQAPVNGV
VKEVLVKDGE KVEKGEVLVI FDTEASKAEL ASYKQIRQAL QQENQFYQML MEENLDPSQV
ETAIIQLKLP KEVATLARNR IALMAENQLF RIQVGESVAN AALDREQFAR LEAARRELDS
RALAAKLEIN QLQKQLSQTQ VQLADAESQL VADRLVLQEI KTRNEDLLQQ SQASLKIEQQ
ILSEISPLAE EGALARYQIN KQQQSVNDRI ADIVEKQGNG EIEYKKQLQQ IETRIAEIQR
FQEEEQRLQA AISQARERYM NTQAVTEKDV RDRIAENKKR MAEVDSQLTK IIVDNRNRIA
EYDSQISRAN QTLRYQELRA PVGGTVFDLQ AFPGFVPQPS QAEALLKIVP DDYLIAEVDV
INKDIGFVRN DMKADIRIDS FPFSEYGDIK GKVVSIGSDA LPPDEIYKYY RFPTRIQLDD
QFLKIQNREI PLQSGMSISA NIKIRENRTV LSLFTEQFTR SVESLKKVD
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