| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_3413 |
|---|
| Symbol | |
|---|
| ID | 7112028 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011729 |
|---|
| Strand | + |
|---|
| Start bp | 3809801 |
|---|
| End bp | 3811438 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643481655 |
|---|
| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
|---|
| Protein accession | YP_002378676 |
|---|
| Protein GI | 218440347 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATACTG GTAATAAAAT TTGGCTCTAC GATACCACCC TCAGAGATGG AGCGCAACGG
GAAGGACTTT CTCTATCCCT TGACGATAAG GTCACTATTG CTCATCAATT GGATAAAATG
GGCATTTCCT TTATTGAGGG GGGATGGCCA GGCGCGAATC CTAGAGATGT CAAATTTTTC
TGGAAAATGC AAGAAAATCC GCTCACTCAC GCGGAATTAG TGGCTTTTTG TTCTACCCGT
CGCCCCCATC AAAAAGCCGC AGAGGATCAA CTCTTACAAG CGATTTTAGC CGCCGGAACT
CGTTGGGTGA CGATTTTTGG CAAATCTTGG GATCTCCACG TGACAGAAGG GCTAAAAACG
ACCCTAGAAG AAAATTTAGC CATGATTAGG GATACCATTG AGTATCTCCG TTCTCAAGGC
AGACGAGTCA TTTATGATGC AGAGCATTGG TTTGATGGCT ATAAAAATAA TCGTGAATAT
GCTCTTTTAA CCCTCAAAAC CGCTAAAAAT GCCGGGGCAG ACTGGTTAGT TTTTTGTGAT
ACCAATGGGG GAACTTTGCC TCATGAAATC GCTCAAATTG TAAACGAGGT AGTAAGCGCC
CTGGAAATCA ATCCTCAAGA TGCTGATAGT CCTAAATTAG GCATTCACAC CCATAATGAT
AGCGGGACGG CAGTAGCGAA TGCTTTAGCG GGTGTTACGG AGGGGGTAAC GATGGTACAG
GGAACGATTA ACGGTTATGG GGAAAGATGT GGCAATGCAA ATTTATGTAC CCTCATCCCC
AATTTACAGT TAAAAATGGG GTATCATTGT TTAGAAGCAG AGCAATTAAG TCAGTTAACT
CAAACCAGTC GTTTAATTAG TGAAATTGCT AATTTAGCCC CAGATGATCA TGCGCCATTT
GTGGGACGTT CTGCCTTTGC TCATAAGGGA GGAATTCATG TCTCCGCAGT GGCTAAAAAT
CCCCTTACCT ATGAACATAT TAAACCAGAA GCGATCGGCA ATCAGCGCCG AATTGTTATT
TCTGATCAGT CGGGATTAAG TAATATTTTA GCTAAAGCGA AGAGTTTTGG GATTGATTTA
AATAAAGATG ATCCTACCTG TCGTCATATT TTAGAACGAT TGAAAGATCT TGAACATGAA
GGTTATCAAT TTGAAGCAGC AGAGGCCAGT TTTGAGTTAT TAATGCGGGA AGCATTAGGA
CAACGACAAG AATTATTTGA ACTCAAAGGG TTTCAAGTCC ATTGTGATAT GTTGCAAGGC
ATAGAAATGC CCTATAGTAA CGCTTTAGCT ACTATTAAAG TAGCAGTTAA TGGTCGAGAT
ATGTTAGAAG TTGCTGAAGG TAACGGGCCT GTGTCTGCTT TAGATAAAGC CTTACGAAAA
GCTTTGATGA ATTTCTATCC CGAAATAGCC GATTTTCAAC TGGCTGATTA TAAGGTGAGA
ATTTTAGATG GTGGTTCAGG AACTTCAGCC AAAACTCGTG TCTTAATTGA GTCTAGAAAT
GGCAAAGAAC GCTGGACAAC TGTAGGCGTT TCTAGCAATA TTTTAGAGGC TTCCTATCAG
GCAGTGGTGG AAGGGATTGA ATATGGGTTA TTGTTGTTAC AGTCATCCGT TAAAACGACA
GTAACCGTTT CAAGTTAA
|
|---|
| Protein sequence | MDTGNKIWLY DTTLRDGAQR EGLSLSLDDK VTIAHQLDKM GISFIEGGWP GANPRDVKFF
WKMQENPLTH AELVAFCSTR RPHQKAAEDQ LLQAILAAGT RWVTIFGKSW DLHVTEGLKT
TLEENLAMIR DTIEYLRSQG RRVIYDAEHW FDGYKNNREY ALLTLKTAKN AGADWLVFCD
TNGGTLPHEI AQIVNEVVSA LEINPQDADS PKLGIHTHND SGTAVANALA GVTEGVTMVQ
GTINGYGERC GNANLCTLIP NLQLKMGYHC LEAEQLSQLT QTSRLISEIA NLAPDDHAPF
VGRSAFAHKG GIHVSAVAKN PLTYEHIKPE AIGNQRRIVI SDQSGLSNIL AKAKSFGIDL
NKDDPTCRHI LERLKDLEHE GYQFEAAEAS FELLMREALG QRQELFELKG FQVHCDMLQG
IEMPYSNALA TIKVAVNGRD MLEVAEGNGP VSALDKALRK ALMNFYPEIA DFQLADYKVR
ILDGGSGTSA KTRVLIESRN GKERWTTVGV SSNILEASYQ AVVEGIEYGL LLLQSSVKTT
VTVSS
|
|---|
| |