Gene PCC7424_3336 details

Gene Information

• Locus tag: PCC7424_3336
• ID: 7111945
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cyanothece sp. PCC 7424
• Kingdom: Bacteria
• Replicon accession: NC_011729
• Strand: +
• Start bp: 3733467
• End bp: 3735413
• Gene Length: 1947 bp
• Protein Length: 648 aa
• Translation table: 11
• GC content: 41%
• IMG OID: 643481580
• Product: RNA-directed DNA polymerase (Reverse transcriptase)
• Protein accession: YP_002378603
• Protein GI: 218440274
• COG category: [L] Replication, recombination and repair
• COG ID: [COG3344] Retron-type reverse transcriptase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 63
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCTAAAA CAGATTCAAC TAGGAATACT GTGGGATGTG GACAAATCAG ACCGAAACTC 
CAGTGGAATC AAATCAACTG GAAACAACTG GAACGACGAG TCTTTAAACT TCAAAAGCGC 
ATTTTCCAAG CTGCTAGTCG TGGCGATGTT AGAACAGTTC GCAGACTCCA GAAGACCCTT 
TTACGCTCTT GGTCAGCAAA AATGCTAGCT GTCAGACGGG TAACACAAGA CAATCAAGGT 
CGTAAAACTG CCGGTGTGGA TGGCGTGAAA TCGTTAACCC CAAAGCAACG AATGAACCTT 
GTAGGGCAAC TCAAATTGAC CTGTAAAGCC AAGCCCACTA GAAGAGTTTG GATACCTAAA 
CCAGGAAAAG ACGAGAAACG TCCATTAGGA ATCCCATGTA TGTCTGAGAG AGCATTACAA 
GCGTTAGTAA AAATAGCATT AGAACCAGAA TGGGAGGCTA AATTCGAGCC AAACAGTTAT 
GGTTTTAGAC CAGGACGCGG ATGTCACGAT GCTATTGAAG CAATATTCTC ACAACTACGC 
GCTAAAGCCA AATACGTTCT AGACGCGGAC ATCTCCAAAT GCTTCGATAA AATTAACCAT 
GAAAAACTGC TCTTAAAACT AAATACCTTC CCCACCCTAC GAAGACAAAT TCGAGCTTGG 
TTAAAAGCTG GTGTGATGGA TGGAGGCAAA CTATTTCCAA CCGAAGAAGG GACACCACAG 
GGAGGCGTTA TAAGTCCTCT ACTAGCCAAT ATCGCCCTAC ACGGAATGGA AAAAATCATT 
AAATCGTTTG CAGAAGAACC TGGAAAAGAC CTCAAAAAAG AATTTCCATT GAATTCAAAA 
AGAGATAGAG CTTCATCTAT CGCCCTAATC CGATATGCAG ACGATTTCGT CCTAATCCAC 
GAAAGCCTAG CCGTAGTGGA AAAGGGCAAG GAGATACTCG AAACATGGTT AAATGAACTA 
GGACTAGAAT TAAAACTCGA AAAGACCCGA ATCACCCATA CCCTGGAAAA ACATCAAGGA 
AAAGTGGGAT TTAACTTTTT AGGGTTCAAT GTCCGACAAT ACAAGTGTAG TCGGCATAAA 
GCCATGAAAA ACACTCGTGG AAAAAACCTC GGCTTTACTC TAACAATAAA GCCAATGAGA 
GAAAAAGTCC TAGAACATTA CAAAAAACTT CGTGACATCG TAGATGCCCA TAAAGCTGCT 
CCCCAAGCTG CCCTGATTTC CAAATTAAAT CCAATAATTA GAGGTTGGTC AAACTACTAC 
AGTACGGTAG TAAGTAGTGA AGAAAAGTCA CTCTTAGACC ATCTCCTATA CCTTAAATTA 
AATAGTTGGG CAAAAAGAAG GCATCCAAAT AAAGGGGTCA ATAAAATCAT GGAAAAATAC 
TGGCATATCA AACAATTAGG GAAATGGAAA TTCTGTACCT TAGAAGACGG AAAAATAACA 
TCCCAACTTC TAAAACACTC AGAAATACAC CATAGAATTC ACACTAAAGT GAAAGGTAGT 
GCCAGCCCCT ATGACGGTGA TTTAATTGAA TGGAGTAAAA GAATGGGTAA TAATCCTATT 
ATTCCAACCA GGATTTCTAA GTTACTCAAG GCACAAAAGG GAAAATGTGT CCAATGCGGA 
TTGTTCTTTA AAAATGGAGA TAAATTAGAA GTTGACCACA TCAAACCAAA GTCTTTAGGC 
GGAAGGGATG AATACAAAAA CTGGCAACTA CTCCATCGTC ATTGCCACGA TGAAAAGACT 
ACTTTAGATG GTAGTATTGG CGACAAATCT GGCTGTAACA GTGCCAAGCC TAAATCACAA 
TCAATATTTC CAGAGAACTA TCGATGGATT GATGATTTGT TGGTGTGCAG TGTACGTGAC 
AAGTACCAAT TAATTGAGGA GCCGGATGAG GTGAAAGTCT CACGTCCGGT TCTGAAGACG 
AGTCAGAGGG GTGACTCTCT GGCTTAG 

 

Protein sequence

MPKTDSTRNT VGCGQIRPKL QWNQINWKQL ERRVFKLQKR IFQAASRGDV RTVRRLQKTL 
LRSWSAKMLA VRRVTQDNQG RKTAGVDGVK SLTPKQRMNL VGQLKLTCKA KPTRRVWIPK 
PGKDEKRPLG IPCMSERALQ ALVKIALEPE WEAKFEPNSY GFRPGRGCHD AIEAIFSQLR 
AKAKYVLDAD ISKCFDKINH EKLLLKLNTF PTLRRQIRAW LKAGVMDGGK LFPTEEGTPQ 
GGVISPLLAN IALHGMEKII KSFAEEPGKD LKKEFPLNSK RDRASSIALI RYADDFVLIH 
ESLAVVEKGK EILETWLNEL GLELKLEKTR ITHTLEKHQG KVGFNFLGFN VRQYKCSRHK 
AMKNTRGKNL GFTLTIKPMR EKVLEHYKKL RDIVDAHKAA PQAALISKLN PIIRGWSNYY 
STVVSSEEKS LLDHLLYLKL NSWAKRRHPN KGVNKIMEKY WHIKQLGKWK FCTLEDGKIT 
SQLLKHSEIH HRIHTKVKGS ASPYDGDLIE WSKRMGNNPI IPTRISKLLK AQKGKCVQCG 
LFFKNGDKLE VDHIKPKSLG GRDEYKNWQL LHRHCHDEKT TLDGSIGDKS GCNSAKPKSQ 
SIFPENYRWI DDLLVCSVRD KYQLIEEPDE VKVSRPVLKT SQRGDSLA