Gene PCC7424_3320 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPCC7424_3320 
Symbol 
ID7111929 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCyanothece sp. PCC 7424 
KingdomBacteria 
Replicon accessionNC_011729 
Strand
Start bp3716855 
End bp3718786 
Gene Length1932 bp 
Protein Length643 aa 
Translation table11 
GC content42% 
IMG OID643481564 
Productsqualene/oxidosqualene cyclase 
Protein accessionYP_002378587 
Protein GI218440258 
COG category[I] Lipid transport and metabolism 
COG ID[COG1657] Squalene cyclase 
TIGRFAM ID[TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones57 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAATAC AAGATCGCAA CTCATCCCCC CAAGTTACAG AAGTATTAAA CCAAGTCAAA 
GACGCGATCG CCGCATCGCA AGACTATTTG ATGTCTATCC AATATCCGGA GGGGTATTGG
TGGGCGGAAT TAGAATCCAA TGTTACGATT ACCGCAGAGG TAGTGCTTTT GCACAAAATT
TGGGGAACGG ATAAAACACG ACCTTTACAT AAAGTAGAAA CCTATCTCCG TCGTCAGCAA
CGGGAACATG GAGGATGGGA ATTATTTTAT GGGGATGGAG GAGATCTCAG TACCTCTGTA
GAAGCTTACA TGGCGTTACG ACTGTTAGGT GTTTCTATTG ATGATCCGGC TTTAATTCGA
GGTAGAGAAT TTATTCTGAA ACGGGGAGGC ATTAGCAAAA GTCGGATTTT TACTAAACTC
CATTTAGCCT TAATTGGGTG TTATGACTGG CGCGGTATTC CCTCAATTCC CCCTTGGATT
ATGTTGTTAC CGGAAAATTT TCCTTTTACT ATTTATGAGA TGTCCAGTTG GGCAAGAAGT
AGTACCGTTC CCCTGTTAAT TGTCTTTGAT AAAAAACCCG TTTATTGTTG TGATCCAACG
ATTAATTTAG ATGAATTGTA TAGTGAAGGA ATAGAAAATG TTAAATATGA TTTACCTAAA
ACGGGAGACT GGACAGATAT TTTTGTCTGG TTAGATGGGG TGTTTAAATT TGCCCAAGAT
TATAATCTTG TTCCCCTACG ACAAGAGAGT TTACAGGCGG CAGAAAGATG GGTATTAGAA
AGACAAGAAG ATAGCGGCGA CTGGGGGGGT ATTATTCCCG CCATGTTGAA TTCTTTATTG
GCGCTGCGGG CGTTAAATTA TGAAGCAGTT GATCCGATCG TTCATCGAGG ATTACAATCG
GTTGATAATT TTGCCATAGA AACAGAAGAC ACTTATCATG TTCAACCTTG TATTTCTCCG
GTTTGGGATA CGGCTTGGGC GATCCGAGCT TTGGTAGAAT CAGGGTTAAA AGCGGATGAT
CCTCGCTTGG TAAAAGGGGC ACAATGGCTA TTAGATAAAC AAATTCTCGA CTATGGAGAC
TGGGCAGTCA AGAATAAACA GGGCACTCCT GGGGGTTGGG CGTTTGAATT TGATAACCGA
TGGTATCCTG ATTTAGATGA CTCTGCTGTA GTTGTCATGG CACTGGATCA GGTTAAAATG
CCCAATGAAG ACCTAAAAAA TGGAGCGATC CGGCGGTGCG TTAGGTGGAT GGCGACTATG
CAATGTAAGG ATGGCGGTTG GGGGGCTTTT GATCTTGATA ATGACCAAAA TTGGCTCAAT
TTTCTTCCCT ATGCTGATCT TAAAGCGATG ATCGATCCTA ATACTTCTGA TGTTACCGCG
CGAGTCTTGG AAATGTTGGG AACTTGTGGC TTAATAATGG ATAGTAATAG AGTGCAAAAA
GCGATCGCTT ATTTAGAAAA AGAACAAGAA CCGGATGGGA GTTGGTTTGG TCGTTGGGGA
GTCAATTATA TTTATGGAAC AAGTGGGGTA TTATCGGCTT TAGCGGTTAT TGCTCCCGAA
ACTCATCAAA AAGAGCTTAA AAAAGGTGCT GCTTGGTTAG TCGGTTGTCA AAATGCCGAT
GGAGGATGGG GCGAAACTTG TTTTAGTTAT AATGACTCTT CTTTAAAAGG AAAAGGGGAT
AGTACCGCCT CACAAACTGC CTGGGGGTTA ATTGGGTTAT TGGCGGCAGG AGAAGCAACG
GGAGAATTTT TCAAAACCGC TATTGAAAGG GGAGTAAATT ATCTCTTAAA AACTCAAAGA
GAAGATGGGA CATGGGATGA AAATTATTTT ACAGGGACGG GTTTTCCCTG TCATTTTTAT
CTTAAATATC ATCTTTATTT ACAATATTTT CCCTTAATTG CTCTCAGTCG TTATCAACGG
TTATTAACCT AA
 
Protein sequence
MQIQDRNSSP QVTEVLNQVK DAIAASQDYL MSIQYPEGYW WAELESNVTI TAEVVLLHKI 
WGTDKTRPLH KVETYLRRQQ REHGGWELFY GDGGDLSTSV EAYMALRLLG VSIDDPALIR
GREFILKRGG ISKSRIFTKL HLALIGCYDW RGIPSIPPWI MLLPENFPFT IYEMSSWARS
STVPLLIVFD KKPVYCCDPT INLDELYSEG IENVKYDLPK TGDWTDIFVW LDGVFKFAQD
YNLVPLRQES LQAAERWVLE RQEDSGDWGG IIPAMLNSLL ALRALNYEAV DPIVHRGLQS
VDNFAIETED TYHVQPCISP VWDTAWAIRA LVESGLKADD PRLVKGAQWL LDKQILDYGD
WAVKNKQGTP GGWAFEFDNR WYPDLDDSAV VVMALDQVKM PNEDLKNGAI RRCVRWMATM
QCKDGGWGAF DLDNDQNWLN FLPYADLKAM IDPNTSDVTA RVLEMLGTCG LIMDSNRVQK
AIAYLEKEQE PDGSWFGRWG VNYIYGTSGV LSALAVIAPE THQKELKKGA AWLVGCQNAD
GGWGETCFSY NDSSLKGKGD STASQTAWGL IGLLAAGEAT GEFFKTAIER GVNYLLKTQR
EDGTWDENYF TGTGFPCHFY LKYHLYLQYF PLIALSRYQR LLT