Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PCC7424_3320 |
Symbol | |
ID | 7111929 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cyanothece sp. PCC 7424 |
Kingdom | Bacteria |
Replicon accession | NC_011729 |
Strand | - |
Start bp | 3716855 |
End bp | 3718786 |
Gene Length | 1932 bp |
Protein Length | 643 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 643481564 |
Product | squalene/oxidosqualene cyclase |
Protein accession | YP_002378587 |
Protein GI | 218440258 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1657] Squalene cyclase |
TIGRFAM ID | [TIGR01507] squalene-hopene cyclase [TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 57 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAATAC AAGATCGCAA CTCATCCCCC CAAGTTACAG AAGTATTAAA CCAAGTCAAA GACGCGATCG CCGCATCGCA AGACTATTTG ATGTCTATCC AATATCCGGA GGGGTATTGG TGGGCGGAAT TAGAATCCAA TGTTACGATT ACCGCAGAGG TAGTGCTTTT GCACAAAATT TGGGGAACGG ATAAAACACG ACCTTTACAT AAAGTAGAAA CCTATCTCCG TCGTCAGCAA CGGGAACATG GAGGATGGGA ATTATTTTAT GGGGATGGAG GAGATCTCAG TACCTCTGTA GAAGCTTACA TGGCGTTACG ACTGTTAGGT GTTTCTATTG ATGATCCGGC TTTAATTCGA GGTAGAGAAT TTATTCTGAA ACGGGGAGGC ATTAGCAAAA GTCGGATTTT TACTAAACTC CATTTAGCCT TAATTGGGTG TTATGACTGG CGCGGTATTC CCTCAATTCC CCCTTGGATT ATGTTGTTAC CGGAAAATTT TCCTTTTACT ATTTATGAGA TGTCCAGTTG GGCAAGAAGT AGTACCGTTC CCCTGTTAAT TGTCTTTGAT AAAAAACCCG TTTATTGTTG TGATCCAACG ATTAATTTAG ATGAATTGTA TAGTGAAGGA ATAGAAAATG TTAAATATGA TTTACCTAAA ACGGGAGACT GGACAGATAT TTTTGTCTGG TTAGATGGGG TGTTTAAATT TGCCCAAGAT TATAATCTTG TTCCCCTACG ACAAGAGAGT TTACAGGCGG CAGAAAGATG GGTATTAGAA AGACAAGAAG ATAGCGGCGA CTGGGGGGGT ATTATTCCCG CCATGTTGAA TTCTTTATTG GCGCTGCGGG CGTTAAATTA TGAAGCAGTT GATCCGATCG TTCATCGAGG ATTACAATCG GTTGATAATT TTGCCATAGA AACAGAAGAC ACTTATCATG TTCAACCTTG TATTTCTCCG GTTTGGGATA CGGCTTGGGC GATCCGAGCT TTGGTAGAAT CAGGGTTAAA AGCGGATGAT CCTCGCTTGG TAAAAGGGGC ACAATGGCTA TTAGATAAAC AAATTCTCGA CTATGGAGAC TGGGCAGTCA AGAATAAACA GGGCACTCCT GGGGGTTGGG CGTTTGAATT TGATAACCGA TGGTATCCTG ATTTAGATGA CTCTGCTGTA GTTGTCATGG CACTGGATCA GGTTAAAATG CCCAATGAAG ACCTAAAAAA TGGAGCGATC CGGCGGTGCG TTAGGTGGAT GGCGACTATG CAATGTAAGG ATGGCGGTTG GGGGGCTTTT GATCTTGATA ATGACCAAAA TTGGCTCAAT TTTCTTCCCT ATGCTGATCT TAAAGCGATG ATCGATCCTA ATACTTCTGA TGTTACCGCG CGAGTCTTGG AAATGTTGGG AACTTGTGGC TTAATAATGG ATAGTAATAG AGTGCAAAAA GCGATCGCTT ATTTAGAAAA AGAACAAGAA CCGGATGGGA GTTGGTTTGG TCGTTGGGGA GTCAATTATA TTTATGGAAC AAGTGGGGTA TTATCGGCTT TAGCGGTTAT TGCTCCCGAA ACTCATCAAA AAGAGCTTAA AAAAGGTGCT GCTTGGTTAG TCGGTTGTCA AAATGCCGAT GGAGGATGGG GCGAAACTTG TTTTAGTTAT AATGACTCTT CTTTAAAAGG AAAAGGGGAT AGTACCGCCT CACAAACTGC CTGGGGGTTA ATTGGGTTAT TGGCGGCAGG AGAAGCAACG GGAGAATTTT TCAAAACCGC TATTGAAAGG GGAGTAAATT ATCTCTTAAA AACTCAAAGA GAAGATGGGA CATGGGATGA AAATTATTTT ACAGGGACGG GTTTTCCCTG TCATTTTTAT CTTAAATATC ATCTTTATTT ACAATATTTT CCCTTAATTG CTCTCAGTCG TTATCAACGG TTATTAACCT AA
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Protein sequence | MQIQDRNSSP QVTEVLNQVK DAIAASQDYL MSIQYPEGYW WAELESNVTI TAEVVLLHKI WGTDKTRPLH KVETYLRRQQ REHGGWELFY GDGGDLSTSV EAYMALRLLG VSIDDPALIR GREFILKRGG ISKSRIFTKL HLALIGCYDW RGIPSIPPWI MLLPENFPFT IYEMSSWARS STVPLLIVFD KKPVYCCDPT INLDELYSEG IENVKYDLPK TGDWTDIFVW LDGVFKFAQD YNLVPLRQES LQAAERWVLE RQEDSGDWGG IIPAMLNSLL ALRALNYEAV DPIVHRGLQS VDNFAIETED TYHVQPCISP VWDTAWAIRA LVESGLKADD PRLVKGAQWL LDKQILDYGD WAVKNKQGTP GGWAFEFDNR WYPDLDDSAV VVMALDQVKM PNEDLKNGAI RRCVRWMATM QCKDGGWGAF DLDNDQNWLN FLPYADLKAM IDPNTSDVTA RVLEMLGTCG LIMDSNRVQK AIAYLEKEQE PDGSWFGRWG VNYIYGTSGV LSALAVIAPE THQKELKKGA AWLVGCQNAD GGWGETCFSY NDSSLKGKGD STASQTAWGL IGLLAAGEAT GEFFKTAIER GVNYLLKTQR EDGTWDENYF TGTGFPCHFY LKYHLYLQYF PLIALSRYQR LLT
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