| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_2883 |
|---|
| Symbol | |
|---|
| ID | 7110687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011729 |
|---|
| Strand | - |
|---|
| Start bp | 3207660 |
|---|
| End bp | 3209696 |
|---|
| Gene Length | 2037 bp |
|---|
| Protein Length | 678 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 643481128 |
|---|
| Product | DNA ligase, NAD-dependent |
|---|
| Protein accession | YP_002378156 |
|---|
| Protein GI | 218439827 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
|---|
| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 52 |
|---|
| Fosmid unclonability p-value | 0.745192 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCATCAG CAACCCCCGA AATCAAACAG CGAGTCGACC AACTGCGATC GCAACTCCAA
AAAGCCAGTT ATGCTTACTA CGTCCTTGAT AATCCAATTA TGGAGGATGT TGTCTACGAT
CAACTGTACC GAGAACTGCA AAATATAGAA ACCCAATACC CCGAATTAAT TACTCCCGAT
AGTCCAACTC AACGGGTAGG CGATAAACTC TCAGAGCAAT TTATCTCGGT AAACCATAAT
ATTCCCCTTT ATAGTTTAGA AAATGCCTTT AATTTACAAG AATTCGCCCG GTGGCAAGAA
AGATGGCAGC GCCTTACACC GGATGTTACC CAATTTGAAT ATGTTTGTGA ATTAAAAATT
GATGGATCGG CGATCGCTTT AACCTATGAA AATGGGTTAT TAGTTCGGGG TGTCACCAGA
GGAGATGGAA TAGTCGGAGA AGAAATTACC CCTAATATTA AAACAATTCG CTCTATTCCT
TTAAAATTAG CTTTAGATAA TCCGCCGGTT CGGATAGAAG TTCGAGGAGA AGCGTTTTTA
CCGATCGAAG AATTTGAGAG AATTAATCAA GAAAAACAAA CCGCCGGGGA ATCTTTATTT
GCTAACCCCC GCAATGCCGC CGCCGGAACC TTACGTCAAC TCGATCCGAG AATTGTCGAT
CGTCGTCGCT TACAATTTTT TGCCTATACT TTATATGTGA TTGATTCCCC ATCAACCCCG
ACAACTCAAT GGGAATCTTT AGAAGATTTA CAACAAATGG GATTTTTAGT CAATCCTAAC
CGAAAACTCT GTCAATCAGA AGCCGAAGTC GACCAATATT ATCAACTTTG GGACACCGAA
AGACATAATT TACCTTACAT GACCGATGGA GTAGTGGTCA AACTCAATGA CTATCAACTT
CAACAACAAT TAGGGTTTAC CCAAAAATTC CCCCGATGGG CGATCGCCCT GAAATATCCC
GCCGAAGAAG CACCCACCCA AGTTAAAAAT ATTACCGTCA ATGTGGGACG AACTGGCGCC
GTTACCCCGA TGGCCATCAT GGAACCGGTA CAACTGGCCG GTACAACTGT ACAAAAAGCG
ACTTTACATA ATAGCGATCG GGTGGCTCAA TTAGATATTA GAGTAGGAGA TACGGTAATT
ATCCGCAAAG CCGGAGAAAT TATTCCCGAA GTCGTCCGGG TGATCGAGGA ATTACGGCCT
CCTAATACTC AACCTTATCA AATGCCGACC CAGTGTCCAG AATGTCACTC AACCTTAGTC
CGTCCCAAAG GAGAGGCGGT GACTCGTTGT GTCAATAGTT CTTGTCCGGC CATTTTGCGG
GGGAGTTTAG TCCATTGGTG TTCACGGGAT GCCTTAGATA TACGAGGGTT AGGGGAAAAA
GTGGTGATCC TATTAATTGA CAATGGGTTA GTCCATTCTA TTGCGGATTT ATATCACTTA
AAAGTAGAAC AAATTGCCTC TCTAGAACGG ATGGGGACAA AAAGCGCCAA TAATTTAATC
AATGCTATTA ATAAAAGTAA ACAGCAACCT TGGTCACGGG TATTATATGG GTTAGGAATT
CGCTATGTGG GGAGTGTTAC CGCTAAACTC TTAAGTGATA ATTTTAAAAG TGTAGAGCAA
TTATCTCAAG CTTCTTTTAC CTCTTTAGAA TCCGTTTATG GCATCGGGGC AGAAATCGCT
CAATCGGTTT ATGATTGGTT TAAAATAGAG GCCAATCAAA CTTTAATTAA AAACTTACAA
CAAGCCGAAT TACAGTTTGA AACCCTATCT GAAACCCCAA AATATCCTCC AATTTCCTCA
ACTCCCTTGG CCGGTAAAAC GGTTGTTATT ACCGGAACGT TACCCAGTTT AAAACGAAAT
GAAGCCCAAG AGTTGATCGA AAAAGCCGGC GGAAAAGTTA CTAACTCAGT CAGTTCTAAA
ACCGATTATC TCTTAGTAGG AGAAGATGCC GGATCGAAAT TAACCAAAGC TCAACAGTTA
GGCATTTCTC AATTGAGTGA AGAACAACTC TTAAAAATGA TTAACCCGCA AGAATAA
|
|---|
| Protein sequence | MPSATPEIKQ RVDQLRSQLQ KASYAYYVLD NPIMEDVVYD QLYRELQNIE TQYPELITPD
SPTQRVGDKL SEQFISVNHN IPLYSLENAF NLQEFARWQE RWQRLTPDVT QFEYVCELKI
DGSAIALTYE NGLLVRGVTR GDGIVGEEIT PNIKTIRSIP LKLALDNPPV RIEVRGEAFL
PIEEFERINQ EKQTAGESLF ANPRNAAAGT LRQLDPRIVD RRRLQFFAYT LYVIDSPSTP
TTQWESLEDL QQMGFLVNPN RKLCQSEAEV DQYYQLWDTE RHNLPYMTDG VVVKLNDYQL
QQQLGFTQKF PRWAIALKYP AEEAPTQVKN ITVNVGRTGA VTPMAIMEPV QLAGTTVQKA
TLHNSDRVAQ LDIRVGDTVI IRKAGEIIPE VVRVIEELRP PNTQPYQMPT QCPECHSTLV
RPKGEAVTRC VNSSCPAILR GSLVHWCSRD ALDIRGLGEK VVILLIDNGL VHSIADLYHL
KVEQIASLER MGTKSANNLI NAINKSKQQP WSRVLYGLGI RYVGSVTAKL LSDNFKSVEQ
LSQASFTSLE SVYGIGAEIA QSVYDWFKIE ANQTLIKNLQ QAELQFETLS ETPKYPPISS
TPLAGKTVVI TGTLPSLKRN EAQELIEKAG GKVTNSVSSK TDYLLVGEDA GSKLTKAQQL
GISQLSEEQL LKMINPQE
|
|---|
| |