| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_2277 |
|---|
| Symbol | |
|---|
| ID | 7111345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011729 |
|---|
| Strand | + |
|---|
| Start bp | 2543548 |
|---|
| End bp | 2545422 |
|---|
| Gene Length | 1875 bp |
|---|
| Protein Length | 624 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 643480535 |
|---|
| Product | thiamine pyrophosphate protein domain protein TPP-binding |
|---|
| Protein accession | YP_002377567 |
|---|
| Protein GI | 218439238 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 0.20798 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATA AATATCCAAA ATCGACTTCT ACTAATACAA CCCTAATCAA GACAAATTCT
AACGATCATA AAAATGGTCA TCTTCCTCTT GCTACAAAAA ATATTAATAT TCAACCCAGT
TACAAAGACG AGACTAGAAA CGGAAGTGAT GGAGACTCAT TAACCGTTGC TCAGGGGATC
GTCAAAATTC TTGAAGATAT GGGCATAAGA GAGGCTTTTG GGGTATCAGG AGGGGCAATG
GCCACCCTTT GGGGCGCTTT ATCTAACAGT CCTCTCATTG ATGTCATACA CTGTCGTCAT
GAAGGAGGGG CAGCCTTCGC AGCCACAGAA GCTTACTTTG CCAGTAATCG CCCTATCGTC
GTCTTTACCA CCGCCGGGCC GGGAATTACG AACGCATTAA CCGGACTGTT AGCGGCTCGT
GATGAAGGCG CTAAAATTAT TCTGCTGTCT GCTTGTACCT CAGCACCACA AAGAGGACGT
TGGGCAATTC AAGAAACCAG TAGTAACACG ATTCCCAAAG GAGGACTTTT TACCCCTGGA
GTCCTGTTCA ATTATGCCTC AGTTCTGGAA TCTCCTAAAG AATTGCCTCA AATCGCTAAA
AAACTTGCTC TCGGTTTATC TCAATCTCGT GGCTATGTAG CTCACATTAG TATTCCTACA
GGCATTCAAT CTGCTGTATT AGAAGAGTCT TTACCGAGTG TAAAGTTAAC TCCCATTATC
CCTGCTCCCA GTCCGCAGGC ACTTCAAAAA GCCATTGAAT TACTCACAGA AGGGGACTTT
GCTATTTGGC TCGGTTTTGG CGCTCGTTCC GCAGCCGGAT TAATTCGCCA ACTGGCGGAA
AAAACTGGGG CGGGGGTGAT GTGTTCTCCT CGTGCTAAAG GAATTTTTCC TGAAAATCAT
CCTTTATTTG TAGGAGTTAC CGGATTAGGG GGTCACGAAT CCGTAATTGA TTATATGCAA
AAGCATAAAC CCTTGCGGAC TTTGGTCTTA GGAACTCGTT TAGGTGAACC TACTTCTTTC
TGGAGTGACT TAATGATTCC TGAGAAGGGA TTTGTTCATG TTGATATCGA TCCGAGTGTG
CCCGGAGTTG CTTATCCCCA TGCTGAAACT TTCCCGATTT TGTCGGATGT AGCTACATTT
GTGTCTGCTT TGCTGCAAAA CTGGCCATCT GATGCTAGTC CGGCAAAAAA CCCCTCTCTA
CCGACACCAG AAGGAGCAAT CATTGAGCCA GCAACCAGTG ATTTAGTCAG ACCTGCCGTT
TTAATGATGG CTATCCAACG GCTGATTATT GACAGCAGTG ACGCGGTAAT CCTGGCTGAA
TCTGGAAATT CCTTTACTTG GGCTACCCAT TTACTCAGAT TTGAGCAAGG GAATCGTTAT
CGAGTCAGTA CCGGTGTGGG TTCGATGGGT CACACTGTAA CGGGAGTTGT CGGTGCGGCC
TGGAGTCGTC AAGGAAAAGC CGTTGCTATT GTTGGGGATG GTTCAATGCT GATGAATAGT
GAAGTCAGCA CCGCCGTAAA ATATCAAATT CCCGCCGTTT GGATTGTTCT CAATGACGGT
TGTTACAATA TGTGTCGCCA GGGAATGCTG TTACTCGGAC TCAAAGGAGC AGATCCCATG
CTTCCTGATA CGAATTTTGC TCTGATGGCT CGTGCGATGG GTGCAAAAGG AATTCGCGTC
GAAACCGAAT CTGATTTAGA ACCAGCACTG AAAGAAGCAA TGGCTAGCAA TGCACCAGTC
GTTATAGATA TAGCGATCGA TCCTAACTGT ATGGCCCCAT CGAAGGGACG CAACCGCAGT
TTAAAAGCTC AAGGAGTTGA GATTGAATCG AGTTCTAAAA AGCAAGATCA TCAGATTTCT
TTTCCTTTAG TTTAA
|
|---|
| Protein sequence | MTDKYPKSTS TNTTLIKTNS NDHKNGHLPL ATKNINIQPS YKDETRNGSD GDSLTVAQGI
VKILEDMGIR EAFGVSGGAM ATLWGALSNS PLIDVIHCRH EGGAAFAATE AYFASNRPIV
VFTTAGPGIT NALTGLLAAR DEGAKIILLS ACTSAPQRGR WAIQETSSNT IPKGGLFTPG
VLFNYASVLE SPKELPQIAK KLALGLSQSR GYVAHISIPT GIQSAVLEES LPSVKLTPII
PAPSPQALQK AIELLTEGDF AIWLGFGARS AAGLIRQLAE KTGAGVMCSP RAKGIFPENH
PLFVGVTGLG GHESVIDYMQ KHKPLRTLVL GTRLGEPTSF WSDLMIPEKG FVHVDIDPSV
PGVAYPHAET FPILSDVATF VSALLQNWPS DASPAKNPSL PTPEGAIIEP ATSDLVRPAV
LMMAIQRLII DSSDAVILAE SGNSFTWATH LLRFEQGNRY RVSTGVGSMG HTVTGVVGAA
WSRQGKAVAI VGDGSMLMNS EVSTAVKYQI PAVWIVLNDG CYNMCRQGML LLGLKGADPM
LPDTNFALMA RAMGAKGIRV ETESDLEPAL KEAMASNAPV VIDIAIDPNC MAPSKGRNRS
LKAQGVEIES SSKKQDHQIS FPLV
|
|---|
| |