| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_2078 |
|---|
| Symbol | |
|---|
| ID | 7111857 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011729 |
|---|
| Strand | + |
|---|
| Start bp | 2329840 |
|---|
| End bp | 2330838 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643480334 |
|---|
| Product | anti-sigma-factor antagonist and sugar transfersase |
|---|
| Protein accession | YP_002377373 |
|---|
| Protein GI | 218439044 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
[COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
|---|
| TIGRFAM ID | [TIGR00377] anti-anti-sigma factor
[TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.000182563 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCCACCC AACTTCCTCC TAAAGACTTC CCCATAGTTT TTAATCATGA TAGTCCCATA
ATTCTCATTC CTAATCGTCT GACGGTTTTA GAGGCAGTGG ATTTTAAAAA CACCTGTCAT
GACTTACTGG TTCAGACTTC TCCAAGCTCA AGAATTATAC TCGATTTCAG CCAAACACAA
TTTATCGATA GTAGTGGAAT AGGGGCATTA GTTCATAATT TAAAAGCCAC CCAGCAACAA
AAAATAGAAC TGGTACTCTA TAATGTACAG CCCCCCATCA TGGGGGTTTT GTCTCTAACA
GGACTCGATC AAATTTTGCT CCTTGAACGT CCTACCGCCT CTGATGTTCC CCAAATTTCC
TCACCTGATG ATAAATCTTT ACCAGAAACT CATCCATCTG TTAAATCTTC CCTAAAACGG
GTTATTGATA TTCTTGGGAG TCTCGTGGGT TTGGCCATTA CAGGGCTTTT ATTTATTCCG
ATTATGCTCG CTATTAAAAG GGATAGTTCA GGCCCCATTT TCTTTACTCA AACTCGTTGT
GGTTGGTTAG GAAAACAGTT TAAAATTATT AAGTTTCGCT CAATGTGTGT CGAGGCAGAA
ACGCTTAAAG ATAAAATTCC TAATCAGGCA AGTGGGGCGA TTTTTAAAAA TGAAAATGAT
CCCAGAGTGA CTAAAGTGGG GCGATTTTTA CGCCGTACCA GTTTAGATGA ATTACCTCAA
TTTTGGAATG TATTGAGAGG AGAAATGAGT TTAGTAGGAA CTCGTCCTCC TACCCCCGAT
GAAGTCGATC GTTATGATAT TCCTCAATGG CGAAGGTTAA ATATTAAACC CGGCATGACA
GGAGAATGGC AAGTTAACGG ACGCTCTCAG GTACGCAATT TTGAGGATAT TATTGAACTG
GATTTACGTT ACCAAAAAAA TTGGAGTTTA TATTATGATA TGGAACTAAT TTTTAAGACA
ATTTTAATTT TATTTAATAA AAACAGTGGG GCGTACTGA
|
|---|
| Protein sequence | MATQLPPKDF PIVFNHDSPI ILIPNRLTVL EAVDFKNTCH DLLVQTSPSS RIILDFSQTQ
FIDSSGIGAL VHNLKATQQQ KIELVLYNVQ PPIMGVLSLT GLDQILLLER PTASDVPQIS
SPDDKSLPET HPSVKSSLKR VIDILGSLVG LAITGLLFIP IMLAIKRDSS GPIFFTQTRC
GWLGKQFKII KFRSMCVEAE TLKDKIPNQA SGAIFKNEND PRVTKVGRFL RRTSLDELPQ
FWNVLRGEMS LVGTRPPTPD EVDRYDIPQW RRLNIKPGMT GEWQVNGRSQ VRNFEDIIEL
DLRYQKNWSL YYDMELIFKT ILILFNKNSG AY
|
|---|
| |