Gene PCC7424_1978 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPCC7424_1978 
Symbol 
ID7109446 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCyanothece sp. PCC 7424 
KingdomBacteria 
Replicon accessionNC_011729 
Strand
Start bp2229264 
End bp2229953 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content44% 
IMG OID643480236 
Productpolysaccharide deacetylase 
Protein accessionYP_002377276 
Protein GI218438947 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value0.68058 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGTTGG CTCCGGTTTA TCCACTGCTG TATCGCGTTC TCCATCCTCT GTTTCCTAAG 
TGTCTTTGGC ATGGCGCAAC AGAGCAAAAA ACCATCGCCT TAACCTTCGA TGATGGGCCT
CATCCTCAAT ACACCCCTAA ATTATTGGCG GTTTTAGACC GCTATCAAAT CGAGGCCAGT
TTTTTTTGGT TAGGCGTTTG TGTTCAAAGA AACCCAGAGC TTGCCAACGA AGTCTTTCAA
AGAGGTCATG GGATCGGATT ACATGGCTAT ACTCATCAAT CCTTTCCTCG ATTAAGTACA
GATGAATTAA AACAAAGTCT CTTGAACACT CAAAATGCGA TCGCCGACGC TTGTCAAATT
GATGGACACC TAATTCGGGA TGTTCGACCC CCCAATGGGT TATTTATGCC CCGACAATTA
CGACAATTAG ACCAATGGGG TTATCGGGTG GTGATGTGGA CAGTCGTTCC GGAAGACTGG
GTTTGTCCAG GAATTTCTGT GGTTGAAGAG CGAACCTTAG CTCAAGTTAA TTCAGGAGCA
ATCATTGTTT TACATGATGG TTATTATGGA GGAAAGGATG TCGCTGCTAT CACCGCTAAT
TTGATTCCTC AACTGCTAGA CCAAGGATAT CAATTTGTAA GTGTCAATGA GTTTTGGCAA
CAAAGACAAT TAACAAAACC CAGAAACTGA
 
Protein sequence
MQLAPVYPLL YRVLHPLFPK CLWHGATEQK TIALTFDDGP HPQYTPKLLA VLDRYQIEAS 
FFWLGVCVQR NPELANEVFQ RGHGIGLHGY THQSFPRLST DELKQSLLNT QNAIADACQI
DGHLIRDVRP PNGLFMPRQL RQLDQWGYRV VMWTVVPEDW VCPGISVVEE RTLAQVNSGA
IIVLHDGYYG GKDVAAITAN LIPQLLDQGY QFVSVNEFWQ QRQLTKPRN