Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PCC7424_1028 |
Symbol | secD |
ID | 7111616 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cyanothece sp. PCC 7424 |
Kingdom | Bacteria |
Replicon accession | NC_011729 |
Strand | - |
Start bp | 1132920 |
End bp | 1134335 |
Gene Length | 1416 bp |
Protein Length | 471 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 643479298 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_002376350 |
Protein GI | 218438021 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 0.016566 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCAAC AACGTTGGAT TTTATTATTT ATTTTTGCAT TAGTTATTGC GGCGATCGTC TGTATAAAAA CTTTGGGTCT TCAATTAGGG TTAGACTTAA GAGGAGGGGC ACAATTAACC ATTGCAGTTA AACCCACAGA AGAAGTAACA ACGATTAGTC AAAATGATTT ACAAGGGGTT CAAACTGTTA TTGAAAACCG AATTAATGCT TTAGGAGTGT CTGAGTCATT AGTGCAAACT GCCGGGGGCG ATAAAATTTT AGTTCAACTG CCTGGAGTCA CCGATCCTCA ACAAGCAGAA CGAATTTTAG GCGGAACAGC ACAACTAGAA TTTAGGCAGC AACGACAAGG AACAGAAGGA CAATTTCAAG CCATCTATGG AATTAAAAGG CAAACCGAAG CAGAATTAGC ACTGATTAAA AATGAGACAA ATAACCCAGA ACAAAAAGAA AAAATAGCTC AGTTAACGAA ATCAATTCAA AATACAAACG AAGAAATTTT AACCCTATTT GACTCCGTTG ATCTAAGCGG AAAAAACCTC AAAGATGCCC GGCCATCTCC GACTCAGTCC GGCAATGGTT GGGAAGTGGC CATCCGGTTT GATGACGCTG GGGGCAAAAA ATTTGCCGAA CTAACAAAAC AGTTAGCGGG TACTGGCCGC AGTATCGGAA TATTCCTAGA CGATAACCTC ATTAGTGGCC CAGTGGTCGG GCCGGAATTT GCAGCTACGG GAATTACGGG AGGGGCGGCA GTCATTACCG GCAACTTTAC CATTGAAACC GCCAATGAAC TGGCCGTACA ACTGAGAGGG GGATCTTTGC CCTTTCCTGT GGAAGTCGTC GAAAATCGTA CCGTTGGGGC AACCTTAGGA CAAGATAGTA TTAGAAGCAG TATTTATGCA GGGATTGGAG GATTAGCGTT AGTTTTGGTG TTTATGGGGC TTTACTATCG CTTACCTGGG GTTATTGCTG ATGTTGCTTT AGCAATTTAT ACCATCCTAA CCTTAGCCGC CTTTGCTTTA ATTGGTGTGA CCTTAACTTT ACCCGGAATT GCCGGATTTA TTCTCAGTAT TGGGATGGCA GTGGATGCCA ATGTCTTAAT TTTTGAACGA ACTAGAGAAG AATTACGCGC CGGTCAAACT CTCTATCGCT CCGTTGAATC AGGGTTTTAC CGAGCGTTTT CGAGTATTCT CGATAGTAAT GTCACCACGT TGATCGCCTG TGGTGCTTTG TTTTGGTTAG GATCGGGGTT AGTTAAAGGA TTTGCTCTTA CCCTAGCAAT TGGGGTATTA ATTAGTATGT TTACGGCTTT AACTTGTAGT CGTACTCTAT TATTACTCAC TGTTCTTAAT GTCCCCGGTA TCCGTCAAAA ACCTCAATGG TTTTGTCCTA ATGTAACTAG CACAGCCAAA TCGTAA
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Protein sequence | MKQQRWILLF IFALVIAAIV CIKTLGLQLG LDLRGGAQLT IAVKPTEEVT TISQNDLQGV QTVIENRINA LGVSESLVQT AGGDKILVQL PGVTDPQQAE RILGGTAQLE FRQQRQGTEG QFQAIYGIKR QTEAELALIK NETNNPEQKE KIAQLTKSIQ NTNEEILTLF DSVDLSGKNL KDARPSPTQS GNGWEVAIRF DDAGGKKFAE LTKQLAGTGR SIGIFLDDNL ISGPVVGPEF AATGITGGAA VITGNFTIET ANELAVQLRG GSLPFPVEVV ENRTVGATLG QDSIRSSIYA GIGGLALVLV FMGLYYRLPG VIADVALAIY TILTLAAFAL IGVTLTLPGI AGFILSIGMA VDANVLIFER TREELRAGQT LYRSVESGFY RAFSSILDSN VTTLIACGAL FWLGSGLVKG FALTLAIGVL ISMFTALTCS RTLLLLTVLN VPGIRQKPQW FCPNVTSTAK S
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