| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC7424_0596 |
|---|
| Symbol | |
|---|
| ID | 7108702 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 7424 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011729 |
|---|
| Strand | + |
|---|
| Start bp | 654663 |
|---|
| End bp | 659078 |
|---|
| Gene Length | 4416 bp |
|---|
| Protein Length | 1471 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 643478866 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_002375925 |
|---|
| Protein GI | 218437596 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAA TCATTAAGAT TGTAGGTATT GGATTTTTAT CTTTATTTCT GGCAATGGTT
TTGGTCTGTT CCCAGGCCGT TGCCCAACCT AACCTTGATC TGTCATTTAA AGACACAGAA
GAACCTTGGC CGGAGATGGG AGGAGCAATT CCAGCGAGAC CGGACAATTT TGCTATAGTG
GCTGATATAA CTGGAGGAAT TAAACCGTTT TTGTTGACTT TAGAGGACAA GCAACTTGAG
GGAAAAAGGG ATGAACAACT CGATCTAATT GGAGGGATAA TTAATGGTGC ATTATTAACG
ATGATGATCG TGGTAACTGT GGGGAGACAG TTATACTTAG GTCAATTAAA TATCCTGAAA
AAAATCAAAC AAGCCCTGAA AAAGAGTAGG TCTCGTTACC GAGCCATTGT AGAAGAGCAA
ACGGAATTAA TCTGTCGATT TCGTCCGGAT GGAACGTTAA CCTTTGTCAA TGAAGCTTAC
TATCGATACT TTGAAAAAAC CCCAGAATAT CTTTTAGAAA AAATATTTTT GCCTTTAATT
CCCTTCCCAG ATCAGCAACA AGTGCTGGAC AATTTAAAAA GTTTAAATCA ACAAAAGAGA
GTGATTACCC ATGAACATCG GGTTATCATA TCATCGGGGG AAATGCGTTG GCATCAGTGG
ACAAATAGAG CCATTGTCGA TCGGCAGGGT AAGATTATTG AATTTCAAGC GGTAGGAAGA
GATATTACCG AACTCAAACA AATAGAGACA GCCTTACGGG AACTCAATGA AGAATTAGAA
CAACGAGTAG AGCAAAGAAC CCTTCAACTA GAAGCACAAA TACAAGAACG CCAAGCAGTG
GAGAAAGCCT TAATGGAGAG TGAGGCAAAA TATGAACGGT TAGTTGAAAG ATTACCGGCG
GTTATTTATC AATTTTCACC GACAAAAGGA AAACTTTACT GTTCATCCTA TGTCAAATCA
ATTTTAGGAT ATTCAACCGA TGAGATTGAT CTGCCTTGGT TATGGATTAA TTCAATTCAT
CCAGAAGATT TACCCAAAGT TAAAGAAATG ATCCAAGAAT TTGTTCAAGG GAAGAATTTT
GAAATAGAAT ATCGAGTAAA GGATGCTCAG GGACAATGGC ATTGGATTTT AGATCGTTCT
ATTGGCAGAC AAGCAGCAGA TCAAGAAATG ATGATTGAGG GGGTAGCTAT CGATATTACT
GAGACCAAAA AGACTCAAAT GGCTTTACAA CAGGCCCATC AATGCTTAAC CTTTCATGTA
GACAATTCTC CTTTAGGGGT AATAGAATGG GACAACGATT ACCGAGTCAA ACGTTGGTCT
TCTCAAGCGG AAAAAATCTT TGGTTGGAAA GAAGAAGAGG TTGTAGGGAA AGGGTGGCAG
GAGTGGCAAT TTGTCTATGA AGAAGATTTA GATCTGATTG TGGCCAAGGT GAGTGAGATC
ATCAAAAAAG AAACGTCTCG TCATTTTGTG ACTAATCGAA ATTACACCAA AACCGGAGAA
ATTATTGACT GTAAATGGTA TAACTCGGTA CAGTATGACC AATCCGGGGA AATTCTTTCT
ATTTTATCTT TGGTTTTAGA TGTAAGCGAG CAAAAACGAG CAGAAGCAGC CCTTCAGGTA
AGCCAGGAGA GATTACAATT GGCTTTAGAG GGAAGTGGGG ATAGTATTTG GGAATGGAAT
TTACAGACGG GAGAAATTTA CTGTGATCAA AGTTGGTGGC AAAAATTGGG ATATGAGCCG
GATCACGAAA CCATGAGTTA TGAGTGGTGG CGTAGTCAAG TCGCCCCGGA ATTTCTGCCC
ATTCATGAAG CTTCATTGCA GGATTATTTA GCGGGAAAAA CCGAATATTT AACCTTAGAA
TACAAAATCC AAAGTTCATC CGGTGACTGG GTGTGGATGA GTGCAAGAGG GAAATCTGTT
GCTAATGATG AGGAGGGAAA CCCGTTAAAA ATAGTAGGAA CTCATCGAGA TATTACCGAA
AGTAAGGAGA TAGAAGAGGA ACTTAAACAG CAAGGGGAAT TATTACAGAC GATTGTTGAT
TATATTCCGG TCATGTTGGC TTACATTGAC CCCAATTATA ACTTTCTTTG GGTTAACGAA
GAATTTGAAA GGATTCTAGG TTGGAGTTTA GAGGAGATCA AAAATTTGAA TATCCTAGCC
CAATTGTATC CCGATCCGGA TGAGCGTCAA TATGTGATGA ACTACATCCA ATCTGCTGAG
GAGAAATGGG AAGATTTTAA AACTCGCTTG AGAAATGGCA CAACTATTGA TACATCTTGG
GCAAATGTTA AACTTTCTAA TGGGGCAATT ATTGGGATAG GTCAAGATAT TACAGTCCGC
AAACACATCG AAGAAGCCTT GAGGGAGTCG GAACAAAAAT ATCGACTCTT ATTTTATGCT
AATCCTAATC CCCTTTGGGT TTATGATGTA AAGACCCTCG CTTTTTTAGA AGTCAATCAA
GCAGCGATCG AACATTATGG GTATTCCAGG GAAGAGTTTT TAGGCATGAC CCTCAGAGAT
ATTCGACCGT CTGAGGATGT TAAAATTTTA GAAACTTATA TTGCTAATAT TAATCCTTCT
TTTAATCGTT CGGGGTATTG GCAACATCGC AAGAGTAACG GAGAGATCAT TGATGTAGAA
ATTACCTCTC ACGGGATAGA ATTTGCCGGA CGACAAGCGA GACTGGTGTT AGTCAATGAT
ATTACTGAAC AACTGAAAGC TCAACAAAAG TTACAAGAAA GTGAAAACCG TTTTCGACGT
GCGGTTATTG ATGCGCCTTT ACCGATATTA ATTCATGCAG AAGACGGAGA AATTATTCAA
GTTAATCATG CTTGGACAGA ATTAACCGGT TATACCCACG AAGATATTCC TACTATCGCC
GACTGGACAG AAAAAGCCTA TGGAGAACGC AAAGAAATCG TTCGTTCAGT GATTGATGAG
CTTTACAAAA TTGATGGCAA AGTTGAAGAA GGAGAATTTA CCATTACCAT TAAAACGGGA
GAAACCCGCA TCTGGAATTT TAGTTCTGCG CCTTTAGGAC GACTTGCCGA TAATCGACGC
TTAATTATGT CAATGGCACT CGATATTACT GAACGAAAAC AAGCAGAAGA ACAGTTACGT
CATGCCGCTG TACACGATCA GTTAACCGGT TTACCCAATC GAATCTTATT ACTTGATCGC
ATTGAACAAG CGATCAAACG GACACAACAA GAGGAAAAAT ATTTATTTGC TCTTTTATTT
ATTGACCTCG ATCGTTTTAA AGTGGTTAAT GATAGTTTAG GTCATTGGGT GGGAGATCAG
TTATTAGGGG CGATCGCCGA TAAATTAAAA GCCTGTGTTC GTCCAATGGA TACAGTAGCT
CGGTTTGGGG GAGATGAATT TGTCATTCTT TTAGAAAATT TGACCTCTCG CACAGAAGCG
ACTAAGATGG CGCAACAGAT TACTGATGAG CTTCGATCGT CTTTCTGTTT ACAGGGACAA
GATTTTTTCA TCTCTGTGAG CATTGGAATT ACTTTTCCTT CCTCTTATGA AGAAAGTGCC
TCAGAACTGC TTCGCAATGC GGATATTGCC ATGTATCGTG CTAAAGAGAA GGGGAGAGCA
AGATATACTA TTTTTGACTC GAAGATGCAC ATTCAGGCGA CTCGGTTATT AGAGTTAGAG
ACGAATTTAC GTCTAGCTTT AGAACGAGAA GAATTGATTG TTCATTATCA ACCGATCGTC
TCTTTAACGA CTGGCAAGTT GCTGGGGTTT GAAGCGTTAG TCCGTTGGGA GCATCCGAAA
AAAGGGTTAA TTTCTCCGGG AGAATTTATA CCTATTGCGG AAGAAACGGG ATTAATTATT
CCTTTAGGGG AATGGGTGTT ATTAGAATCC TGTCGTCAGA TGAAAGCTTG GCAAAAAGAA
TTTTCCGGGT TAGACAAAAT CAGGGTAAGC GTTAATCTTT CTGGAAAACA GCTAGAGTAT
CCCCATTTAA TCAACTGTCT TGAGTCTATT TTAAAACAAA CTGGACTAGA AGGCAAGAAC
TTAAAGTTAG AAATTACTGA AAGTATGCTA ATGAATAATA AAGAAGTGGT CAGTGATTTA
TTATTGCAAA TTAAGGGAAA AAATATTCAA ATCAGTATTG ATGATTTTGG AACGGGTTAT
TCTTCTTTAA GTTATTTACA CTATTTACCA GTAGATACAT TAAAAATAGA CCGTTCTTTT
GTCAATAGGA TGACTCAATT GGGAGAAAAT TTTGAGATTG TGGAAGCGAT TATTAACTTA
GCGCATCACT TACAGATGGA TGTTGTCGCT GAAGGAGTAG AAACAGAACA ACATATCAAA
CAACTGAAAC AATTAGGGTG TGAGTCGGGA CAAGGATACT TTTTTTCTAA ACCTTTAGAT
AGTCAAAAAG TGACAAGTTG GTTTGAAAAG CTTTAA
|
|---|
| Protein sequence | MKTIIKIVGI GFLSLFLAMV LVCSQAVAQP NLDLSFKDTE EPWPEMGGAI PARPDNFAIV
ADITGGIKPF LLTLEDKQLE GKRDEQLDLI GGIINGALLT MMIVVTVGRQ LYLGQLNILK
KIKQALKKSR SRYRAIVEEQ TELICRFRPD GTLTFVNEAY YRYFEKTPEY LLEKIFLPLI
PFPDQQQVLD NLKSLNQQKR VITHEHRVII SSGEMRWHQW TNRAIVDRQG KIIEFQAVGR
DITELKQIET ALRELNEELE QRVEQRTLQL EAQIQERQAV EKALMESEAK YERLVERLPA
VIYQFSPTKG KLYCSSYVKS ILGYSTDEID LPWLWINSIH PEDLPKVKEM IQEFVQGKNF
EIEYRVKDAQ GQWHWILDRS IGRQAADQEM MIEGVAIDIT ETKKTQMALQ QAHQCLTFHV
DNSPLGVIEW DNDYRVKRWS SQAEKIFGWK EEEVVGKGWQ EWQFVYEEDL DLIVAKVSEI
IKKETSRHFV TNRNYTKTGE IIDCKWYNSV QYDQSGEILS ILSLVLDVSE QKRAEAALQV
SQERLQLALE GSGDSIWEWN LQTGEIYCDQ SWWQKLGYEP DHETMSYEWW RSQVAPEFLP
IHEASLQDYL AGKTEYLTLE YKIQSSSGDW VWMSARGKSV ANDEEGNPLK IVGTHRDITE
SKEIEEELKQ QGELLQTIVD YIPVMLAYID PNYNFLWVNE EFERILGWSL EEIKNLNILA
QLYPDPDERQ YVMNYIQSAE EKWEDFKTRL RNGTTIDTSW ANVKLSNGAI IGIGQDITVR
KHIEEALRES EQKYRLLFYA NPNPLWVYDV KTLAFLEVNQ AAIEHYGYSR EEFLGMTLRD
IRPSEDVKIL ETYIANINPS FNRSGYWQHR KSNGEIIDVE ITSHGIEFAG RQARLVLVND
ITEQLKAQQK LQESENRFRR AVIDAPLPIL IHAEDGEIIQ VNHAWTELTG YTHEDIPTIA
DWTEKAYGER KEIVRSVIDE LYKIDGKVEE GEFTITIKTG ETRIWNFSSA PLGRLADNRR
LIMSMALDIT ERKQAEEQLR HAAVHDQLTG LPNRILLLDR IEQAIKRTQQ EEKYLFALLF
IDLDRFKVVN DSLGHWVGDQ LLGAIADKLK ACVRPMDTVA RFGGDEFVIL LENLTSRTEA
TKMAQQITDE LRSSFCLQGQ DFFISVSIGI TFPSSYEESA SELLRNADIA MYRAKEKGRA
RYTIFDSKMH IQATRLLELE TNLRLALERE ELIVHYQPIV SLTTGKLLGF EALVRWEHPK
KGLISPGEFI PIAEETGLII PLGEWVLLES CRQMKAWQKE FSGLDKIRVS VNLSGKQLEY
PHLINCLESI LKQTGLEGKN LKLEITESML MNNKEVVSDL LLQIKGKNIQ ISIDDFGTGY
SSLSYLHYLP VDTLKIDRSF VNRMTQLGEN FEIVEAIINL AHHLQMDVVA EGVETEQHIK
QLKQLGCESG QGYFFSKPLD SQKVTSWFEK L
|
|---|
| |