Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PCC7424_0540 |
Symbol | |
ID | 7108646 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Cyanothece sp. PCC 7424 |
Kingdom | Bacteria |
Replicon accession | NC_011729 |
Strand | - |
Start bp | 594058 |
End bp | 595806 |
Gene Length | 1749 bp |
Protein Length | 582 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 643478812 |
Product | MscS Mechanosensitive ion channel |
Protein accession | YP_002375871 |
Protein GI | 218437542 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 63 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAATCA AGAGGCTACA GCTAAATAAC CGAAAAATAG TTATAGCTCC CATTTTTAGA AGACTCGTCT TGAGTGTTGT CTGTTTGCTG GTGATTAGCT CGATGATAAC TTGGGAAACT CCATCATCAG CGAGGCAACC CATCATCAGG AATATATTTA CTGAGCGTGT AGAATTCGCT TCGGTTTATC TTGATGGGTA TCCTTTATTT CAGATAGCGT CTCAAGACGT TTCTTTTTCA GACTCAGAAC CCGAAGATAG TTTAACCCCC TTAGAAAGGC GAGTTGAGCG CGTCGAACGA ACCTTACAAA AAATTATTAC CACAGATTTC GATCCTAAAA CCTTACAAGT TGGGGTAGCA ACACTCAATA ATTTAACGGT TATTGTTGCC TCCGATCAAG AGAATTTAGA TCAACAAGTC ATCGTCACGG TGACAGAATT AGATGCTCAA ATTGCCTCTT CCTCTGTTGA AAATTTAGCC CAACAATGGA GTCAAATTAT CCGAGAAGCC CTCATCAAAG GGTGGGAAGC TCGTCAACCA GAAGCCCGAA AACATCAACT GACAACAGCC GGTACAATTC TTCTAGCCGT AATCATCATA AGTGCTTTAG ATGTTTGGGG GCAAAAGTGG TTAAAAAAAC GCTTTAGTAT TCTTAAAAAA AGACTTCAAA AAAAAGCTCC GACTTCCTTA AAATCGAAAG CCCCCCTCTC TCCCGATGAT ATGGGTCAAA TTTTGCCTAA ACCTATCATC CTTTCCAGTC GGTTTCGCCA ACAAGCTAAT CTCCAGGAAA GACTGGCACT TAATATTATG CTGCAAAGAT TCTTGCAAGT TGGATTGATC TGGCTCTGGT TTAGTGGGAT AGCAGTTGTT TTATATGTGT TTCCAGAAAC TCGACTCCAA GGGCGTGATA TTTTGGTTAT TCCCTTAAAA ATTGTTCTGA TTTGGGTTAT CCTCACCCTC ATTGGCAATT TCATCCTTGT ACAAGTCAAT CATCGGCTTA AGGAATGGGT AGAACAAAGC TCTATCATAA CTGAAGATTC CCAAAGACGA GTATTGCGAG CATCTACTTT ATTAGAAGTT TTACGAGGAA TGATTAAGTT TAGTTTAGGG TCTATTGGGA TTATTTGGTT TTTAGTTTGG ATTGAATTTC CCCTTAACTC GGTGCTGACA GGAGCAGGAA TACTCGGAGC GGCTCTTACC TTTGTGTTCC AAAATTTATT GAGAGATTGG ATCAATGGCA TTTTAATCAT TTTTGAGGAT CAATATGCCG TCGGCGATCT AATTGAGTAT AACGGAATGC TCGGAATTGT GGAAAATATG AGTCTGCGAA TCACCCAAAT TCGTACTTTA GACGGACGCT TAAGTACCAT TCCCCACAAT CAAATCACCG TTGCTCATAA TCTGACTAAA GATTGGTCAC GAGTTAATTT TAGGATCGAA GTGGCTTATG ATAGTGATCC AACAGTAGTC ATCGCTTTAA TGAAGCAAGT CGCTCAAGAA ATGGCCGAAG ATTCTGACTG GCAACAAGAT ATTATTGATC CGGTTAGTTT AATTGGTGTA AACCGAGTTG CTCATTCGGG GATTGAAATT ATGATGTGGA TTCAGGTTAA GCGGTTGCGC CAGTTATTTG TCGAGCAAGA ATTCCGCCGC CGTCTTAAAT TAGCTTTTGA TCACAAAGGA ATTCAAATCG GTATTCCTAA ACAAAGTCTT TTATTTCCCG AAAACACCCA ACCATTGAGT GATGGATAA
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Protein sequence | MRIKRLQLNN RKIVIAPIFR RLVLSVVCLL VISSMITWET PSSARQPIIR NIFTERVEFA SVYLDGYPLF QIASQDVSFS DSEPEDSLTP LERRVERVER TLQKIITTDF DPKTLQVGVA TLNNLTVIVA SDQENLDQQV IVTVTELDAQ IASSSVENLA QQWSQIIREA LIKGWEARQP EARKHQLTTA GTILLAVIII SALDVWGQKW LKKRFSILKK RLQKKAPTSL KSKAPLSPDD MGQILPKPII LSSRFRQQAN LQERLALNIM LQRFLQVGLI WLWFSGIAVV LYVFPETRLQ GRDILVIPLK IVLIWVILTL IGNFILVQVN HRLKEWVEQS SIITEDSQRR VLRASTLLEV LRGMIKFSLG SIGIIWFLVW IEFPLNSVLT GAGILGAALT FVFQNLLRDW INGILIIFED QYAVGDLIEY NGMLGIVENM SLRITQIRTL DGRLSTIPHN QITVAHNLTK DWSRVNFRIE VAYDSDPTVV IALMKQVAQE MAEDSDWQQD IIDPVSLIGV NRVAHSGIEI MMWIQVKRLR QLFVEQEFRR RLKLAFDHKG IQIGIPKQSL LFPENTQPLS DG
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