Gene PCC7424_0540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPCC7424_0540 
Symbol 
ID7108646 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCyanothece sp. PCC 7424 
KingdomBacteria 
Replicon accessionNC_011729 
Strand
Start bp594058 
End bp595806 
Gene Length1749 bp 
Protein Length582 aa 
Translation table11 
GC content40% 
IMG OID643478812 
ProductMscS Mechanosensitive ion channel 
Protein accessionYP_002375871 
Protein GI218437542 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0668] Small-conductance mechanosensitive channel 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones63 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAATCA AGAGGCTACA GCTAAATAAC CGAAAAATAG TTATAGCTCC CATTTTTAGA 
AGACTCGTCT TGAGTGTTGT CTGTTTGCTG GTGATTAGCT CGATGATAAC TTGGGAAACT
CCATCATCAG CGAGGCAACC CATCATCAGG AATATATTTA CTGAGCGTGT AGAATTCGCT
TCGGTTTATC TTGATGGGTA TCCTTTATTT CAGATAGCGT CTCAAGACGT TTCTTTTTCA
GACTCAGAAC CCGAAGATAG TTTAACCCCC TTAGAAAGGC GAGTTGAGCG CGTCGAACGA
ACCTTACAAA AAATTATTAC CACAGATTTC GATCCTAAAA CCTTACAAGT TGGGGTAGCA
ACACTCAATA ATTTAACGGT TATTGTTGCC TCCGATCAAG AGAATTTAGA TCAACAAGTC
ATCGTCACGG TGACAGAATT AGATGCTCAA ATTGCCTCTT CCTCTGTTGA AAATTTAGCC
CAACAATGGA GTCAAATTAT CCGAGAAGCC CTCATCAAAG GGTGGGAAGC TCGTCAACCA
GAAGCCCGAA AACATCAACT GACAACAGCC GGTACAATTC TTCTAGCCGT AATCATCATA
AGTGCTTTAG ATGTTTGGGG GCAAAAGTGG TTAAAAAAAC GCTTTAGTAT TCTTAAAAAA
AGACTTCAAA AAAAAGCTCC GACTTCCTTA AAATCGAAAG CCCCCCTCTC TCCCGATGAT
ATGGGTCAAA TTTTGCCTAA ACCTATCATC CTTTCCAGTC GGTTTCGCCA ACAAGCTAAT
CTCCAGGAAA GACTGGCACT TAATATTATG CTGCAAAGAT TCTTGCAAGT TGGATTGATC
TGGCTCTGGT TTAGTGGGAT AGCAGTTGTT TTATATGTGT TTCCAGAAAC TCGACTCCAA
GGGCGTGATA TTTTGGTTAT TCCCTTAAAA ATTGTTCTGA TTTGGGTTAT CCTCACCCTC
ATTGGCAATT TCATCCTTGT ACAAGTCAAT CATCGGCTTA AGGAATGGGT AGAACAAAGC
TCTATCATAA CTGAAGATTC CCAAAGACGA GTATTGCGAG CATCTACTTT ATTAGAAGTT
TTACGAGGAA TGATTAAGTT TAGTTTAGGG TCTATTGGGA TTATTTGGTT TTTAGTTTGG
ATTGAATTTC CCCTTAACTC GGTGCTGACA GGAGCAGGAA TACTCGGAGC GGCTCTTACC
TTTGTGTTCC AAAATTTATT GAGAGATTGG ATCAATGGCA TTTTAATCAT TTTTGAGGAT
CAATATGCCG TCGGCGATCT AATTGAGTAT AACGGAATGC TCGGAATTGT GGAAAATATG
AGTCTGCGAA TCACCCAAAT TCGTACTTTA GACGGACGCT TAAGTACCAT TCCCCACAAT
CAAATCACCG TTGCTCATAA TCTGACTAAA GATTGGTCAC GAGTTAATTT TAGGATCGAA
GTGGCTTATG ATAGTGATCC AACAGTAGTC ATCGCTTTAA TGAAGCAAGT CGCTCAAGAA
ATGGCCGAAG ATTCTGACTG GCAACAAGAT ATTATTGATC CGGTTAGTTT AATTGGTGTA
AACCGAGTTG CTCATTCGGG GATTGAAATT ATGATGTGGA TTCAGGTTAA GCGGTTGCGC
CAGTTATTTG TCGAGCAAGA ATTCCGCCGC CGTCTTAAAT TAGCTTTTGA TCACAAAGGA
ATTCAAATCG GTATTCCTAA ACAAAGTCTT TTATTTCCCG AAAACACCCA ACCATTGAGT
GATGGATAA
 
Protein sequence
MRIKRLQLNN RKIVIAPIFR RLVLSVVCLL VISSMITWET PSSARQPIIR NIFTERVEFA 
SVYLDGYPLF QIASQDVSFS DSEPEDSLTP LERRVERVER TLQKIITTDF DPKTLQVGVA
TLNNLTVIVA SDQENLDQQV IVTVTELDAQ IASSSVENLA QQWSQIIREA LIKGWEARQP
EARKHQLTTA GTILLAVIII SALDVWGQKW LKKRFSILKK RLQKKAPTSL KSKAPLSPDD
MGQILPKPII LSSRFRQQAN LQERLALNIM LQRFLQVGLI WLWFSGIAVV LYVFPETRLQ
GRDILVIPLK IVLIWVILTL IGNFILVQVN HRLKEWVEQS SIITEDSQRR VLRASTLLEV
LRGMIKFSLG SIGIIWFLVW IEFPLNSVLT GAGILGAALT FVFQNLLRDW INGILIIFED
QYAVGDLIEY NGMLGIVENM SLRITQIRTL DGRLSTIPHN QITVAHNLTK DWSRVNFRIE
VAYDSDPTVV IALMKQVAQE MAEDSDWQQD IIDPVSLIGV NRVAHSGIEI MMWIQVKRLR
QLFVEQEFRR RLKLAFDHKG IQIGIPKQSL LFPENTQPLS DG