Gene BbuZS7_0562 details

Gene Information

• Locus tag: BbuZS7_0562
• Symbol: ligA
• ID: 7106092
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Borrelia burgdorferi ZS7
• Kingdom: Bacteria
• Replicon accession: NC_011728
• Strand: +
• Start bp: 558219
• End bp: 560201
• Gene Length: 1983 bp
• Protein Length: 660 aa
• Translation table: 11
• GC content: 29%
• IMG OID: 643477980
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_002375058
• Protein GI: 218249478
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0449275
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAGCA AAGTACAGCA AGAAATTGCA GACTTGAAGA AGTTGATTAG AAAGTGGGAT 
AAAGAATATT ATGTCGATTC TTTGCCTAGT GTTGAAGATT TTGTATATGA TAAGCATATT 
TTAAGGCTTC AAGAGCTAGA AAGTAAGTAC CCTGAATATA AGACCTTAGA TTCTCCTACT 
CTTAAATTTG GCAGCGATCT TTTAAATGAT TTTAAAGAGG TTGAACATTC TGCACCTATA 
TTAAGTCTTG ATAAGGTTTA TGATCTTGAT TTGCTAAAAT CATGGATAGA TAAGATTGAT 
TTTAATAATT CTTTTAATAT TTCTGTTGAG CCAAAGATTG ATGGATGTTC TATCGTTCTT 
TATTATAAAG ATGGCGTTCT TGAAAAAGCT CTTACTAGAG GTAATGGAAA ATTTGGTAAT 
GATGTTACTA TAAACGTTAG AACCATTAGA TATATACCTT TATTTCTTGA TGAAAAGGTT 
GATTTAGTAT TAAGGGGTGA GGTTTATATT ACTAAAGAAA ATTTTTTGAA AATAAATAAA 
TTTTTGGAAA AGCCTTATAC GAATTCTAGA AATTTGGCTT CGGGAATACT TAGAAGGGTT 
GATAGTAGAG AAGTCGCTAA TTTTCCTTTA AATATTTTCA TTTATGATTT TTTGAATGCT 
GGATTAGAAT TTAAAACCAA TGATTTAGCT ACTGCAAGAC TTAAGAAATT GGGTTTTAAA 
GTCAATCCCT TGATTAGGTT TTTTGATCTA AAAAATTCAA TTGGAGAAGT TTTAAATTAC 
ATAGCAGATA TAATAAAAAA AAGAGATTCT TTTGAATATG AAATAGATGG TGTTGTTCTT 
AAGGTTAGTG ATTTTGCTTT AAGAGAAAGA TTGGGGTATA CTGCACATCA TCCCAAATGG 
GCAATGGCTT ACAAATTTGA AGCGCTTTCG GATTTTAGTA GGGTAAATAG CATTGTTGTT 
CAGGTTGGAC GTAGTGGTAA AATTACTCCG GTTGCTAATA TTGATAAAGT TTTTGTTTCA 
GGAGCTTTTA TTACTAGTGC AACGTTACAC AATCAAGATT ATATAAGGTC TATTGGTTTG 
AATGTTGGTG ATGTTGTTAA AGTTTCAAGA AGAGGAGATG TAATTCCTGC TGTTGAAATG 
GTGATAAATA AATTTTCAAC AGGATTTTTC AAAGTTCCTG ATAATTGTCC AGCTTGTAAA 
ACGGCTGTAG TAAAAGAGGG GGCACATTTT TTTTGTCCAA ATAATAATTG TCCTTCAGTA 
GCAGTTGAGA GAATAAAATA TTTTTGTAGT AAAAATTGTA TGGATATTGA AGGGTTTTCC 
GACAAGATAA TTTCTTTTCT TTTTGAGAAA AAATTTATTT TTTCAGAAAT TGATCTTTAT 
ACTTTTGATT TTTATAAGCT TCTTGAATTT AAAGGGTTTA AAGATAGAAA GATAAATAAT 
TTGATAAATT CAATTGAAGC TAGCAAAAAA AAGCCATTTA GTAAATTACT TCTTAGTATG 
GGAATTAAAG ATTTAGGGGA AAATACAATA ATGTTGTTGT TTCTTAATAA TTTAAATTCA 
TTTTCAAAGC TTTTTAAGCT TTGTCAAGAC AGATATTTTG CATTTTCAAC ATTGTTGAAA 
ATTAAAGGCA TAGGAGAAAA AATTGCTTTA AATATTATTG AAGCTTTTAA TGATTCAGTA 
ATGCTTAATA AGTTTAAATT TTTTGAAAAT TTGGAATTTA AAATGGAAGA GGTTGTTGCG 
ATTGATGGTG AGAATAAGTT ATTGGCCGGT AAAAAGTTTT GCATTACTGG AACTTTTAAT 
GGTTATTCCA GGTCTATTGT TATTGATAAG CTAAAAAATA AAGGAGCAAT TTTTAATACT 
TGTGTGACTG GGAGTTTAGA TTTTCTTATT GTAGGAGAAA AAGCTGGATC AAAGCTTAAA 
AAAGCTTTGA GTTTAAATAT AAAAATTATG TCTTTTGAAG ACATAAAAAG TTACTTAGAT 
TAG 

 

Protein sequence

MSSKVQQEIA DLKKLIRKWD KEYYVDSLPS VEDFVYDKHI LRLQELESKY PEYKTLDSPT 
LKFGSDLLND FKEVEHSAPI LSLDKVYDLD LLKSWIDKID FNNSFNISVE PKIDGCSIVL 
YYKDGVLEKA LTRGNGKFGN DVTINVRTIR YIPLFLDEKV DLVLRGEVYI TKENFLKINK 
FLEKPYTNSR NLASGILRRV DSREVANFPL NIFIYDFLNA GLEFKTNDLA TARLKKLGFK 
VNPLIRFFDL KNSIGEVLNY IADIIKKRDS FEYEIDGVVL KVSDFALRER LGYTAHHPKW 
AMAYKFEALS DFSRVNSIVV QVGRSGKITP VANIDKVFVS GAFITSATLH NQDYIRSIGL 
NVGDVVKVSR RGDVIPAVEM VINKFSTGFF KVPDNCPACK TAVVKEGAHF FCPNNNCPSV 
AVERIKYFCS KNCMDIEGFS DKIISFLFEK KFIFSEIDLY TFDFYKLLEF KGFKDRKINN 
LINSIEASKK KPFSKLLLSM GIKDLGENTI MLLFLNNLNS FSKLFKLCQD RYFAFSTLLK 
IKGIGEKIAL NIIEAFNDSV MLNKFKFFEN LEFKMEEVVA IDGENKLLAG KKFCITGTFN 
GYSRSIVIDK LKNKGAIFNT CVTGSLDFLI VGEKAGSKLK KALSLNIKIM SFEDIKSYLD