Gene PCC8801_3948 details

Gene Information

• Locus tag: PCC8801_3948
• ID: 7103891
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Cyanothece sp. PCC 8801
• Kingdom: Bacteria
• Replicon accession: NC_011726
• Strand: +
• Start bp: 4135227
• End bp: 4137299
• Gene Length: 2073 bp
• Protein Length: 690 aa
• Translation table: 11
• GC content: 34%
• IMG OID: 643476946
• Product: HMG-I and HMG-Y DNA-binding domain protein
• Protein accession: YP_002374047
• Protein GI: 218248676

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTAATG AAATTTTTGT TAACGATATT ATCCAATGGA AATCTGATAA TGACGCTGAT 
TCACTCATTG AACGAGTTGT CTGGATTGAT GAAGGTTATA CAATAGCGTT TGTATTTGAT 
ATTAATGCTG ATAAAGGATT TCCTCGCAGT TGCTCAGTTA AAGATATCAA AGAAGCTTTG 
AAACACAAGG AAGCATTCAA ATTAGAATTA GATCCATGGG GAAGAATGAT ACAGGAAGAG 
AGTTTATCTG AGAAAGATAA ACTACTAAGA GATAATGCCT GGGAAATTAT TTCATCATTA 
GTAATTCAAG AACCTGATAT ATACTATCGG GATATCAGAG GAAAGCTTGT TCAACAAGTT 
ATTGATGAAT ATAATCAAGA TCTTCAAGAG AATAAGTTGA TTCCGTTAAC CGTTTATAAG 
TATTTACGAA GATTTTGGCA ACGAGGTAAA AATAAGAACG CTTTATTACC TGATTATAAT 
AATTCAGGGG GTAAGGGAAA GCGAAGACAA GCTGGTGATA AAAAAAGAGG AAGACCAAGA 
AAATATAAAA ACCATCCTGA AATTGGTGAA GGAATTAATA TTACTGAACA AGATAGACAG 
ATTTTCAGAA TTGCTATTAA TAAATTCTAT CGAACTAAAA CTCAAAACTC TCTAATGACA 
GCGTATAAAT TAATGATTAA AGATTATTAT GCTGAAGAAT ACCAATTTGA TGAGAAAAAT 
GTGAAAACAT CAATTCTCAT TCCTCCTGAA AAACGTCCGA CTTTTACCCA ATTTCGCTAC 
TGGTATGAAA CTGAAAATAG TAATTTAGAG AAAACAATTA CTACTCGAAA AGGATCTAAA 
AGATATGCGT TAGAAAATCG AGCCCTTTTA GGAACCTCGA AACAGGAAAC CATTGGACCT 
GGTTCTCGAT ATCAAATTGA TGCGACAGTT GCGGATATTT ATTTACTGTC TAAATATCAG 
CGTAACTGGA TTATTGGACG ACCTGTTGTG TATGTAGTTA TTGATGTCTT TAGTCGCATG 
ATTGTGGGGG TATATGTAGG ATTAGAAGGA CCTTCATGGT TAGGTGCAAT GATGGCTTTA 
GTGAATGCAG CAACTAATAA AGTTTCATTT TGTCGGGAAT TTAAGATTAA TATTACTGAG 
GAAGAATGGC CTTGTTATCA CATTCCTGAA TGTCTTTTAG GAGATAGAGG TGAGTTAGTT 
GGAATGACAG TAGAGACTAT AATTCCTAAT TTATTTATTC GGGTAGAAAA TGCAGCCTCT 
TATCGAGCAG ATTGGAAGGG TTTAGTTGAA AGACATTTTC GAGTCATTCA TGAACGAGTT 
AAACCATTTT TACCAGGATT TATTGATACT GATTTTAGGC AAAGAGGAGC GAAAGATTAC 
CGTTTAGATA GTCGTCTCGA TATTGACCAA TTCACTGAAA TCATTATTGA GATTATTCTT 
TACCATAATA GCCATGAGTT AAAGAGCTAT AATCGAGATG AGCAGATGAT TGCTGATGAT 
ATAGTTCCTA TTCCTATTGA GTTATGGAAG TGGGGAATTA AGAATCGTTC AGGTAAGTTA 
AGAACGATTA ATGAAGATAT TATAAAACTG AATTTAATGC CGACAGAAAA AGCTAGAATT 
ACAGAAAGAG GTATTCGCTT TAAATCCATG TATTATAGTT GTGAAAAAGC GATTAATGAG 
ATGTGGTTTG AAAAAGCAAG AAGTAAGCTT TTATCCAAGG AAGAAAAATC TTTGAAAATT 
GCCTATGATC CTCGACAAAT GGATTTCATT TATTTACCTT CTCCAGATGG TCGGGACTTT 
GAAAAATGTT ATTTAATTGA TCCAGATGAA CGCTATGCTC ATAAAACAAT TTATGATGTA 
GAATATTTAT TAGCTTATGA AAAGTTACAA CAACAGAAAC GAGAAGGCAA GCAGCTACAA 
AATGAAGTTG ATTTAATGGC TAAAATAGAA AGTGTTGCTA GTCGTGCTAA ACAAGAAACG 
GAAAAATACC AATATAAAAG TGAGAGCAAT TTACAGAAAA CATCTGGTAT TCGAGAGCAT 
AGAGCAGCCG AAAAAAACAG CGTAGGGAAG TAG 

 

Protein sequence

MSNEIFVNDI IQWKSDNDAD SLIERVVWID EGYTIAFVFD INADKGFPRS CSVKDIKEAL 
KHKEAFKLEL DPWGRMIQEE SLSEKDKLLR DNAWEIISSL VIQEPDIYYR DIRGKLVQQV 
IDEYNQDLQE NKLIPLTVYK YLRRFWQRGK NKNALLPDYN NSGGKGKRRQ AGDKKRGRPR 
KYKNHPEIGE GINITEQDRQ IFRIAINKFY RTKTQNSLMT AYKLMIKDYY AEEYQFDEKN 
VKTSILIPPE KRPTFTQFRY WYETENSNLE KTITTRKGSK RYALENRALL GTSKQETIGP 
GSRYQIDATV ADIYLLSKYQ RNWIIGRPVV YVVIDVFSRM IVGVYVGLEG PSWLGAMMAL 
VNAATNKVSF CREFKINITE EEWPCYHIPE CLLGDRGELV GMTVETIIPN LFIRVENAAS 
YRADWKGLVE RHFRVIHERV KPFLPGFIDT DFRQRGAKDY RLDSRLDIDQ FTEIIIEIIL 
YHNSHELKSY NRDEQMIADD IVPIPIELWK WGIKNRSGKL RTINEDIIKL NLMPTEKARI 
TERGIRFKSM YYSCEKAINE MWFEKARSKL LSKEEKSLKI AYDPRQMDFI YLPSPDGRDF 
EKCYLIDPDE RYAHKTIYDV EYLLAYEKLQ QQKREGKQLQ NEVDLMAKIE SVASRAKQET 
EKYQYKSESN LQKTSGIREH RAAEKNSVGK