Gene PCC8801_3394 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPCC8801_3394 
Symbol 
ID7105211 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCyanothece sp. PCC 8801 
KingdomBacteria 
Replicon accessionNC_011726 
Strand+ 
Start bp3541370 
End bp3541966 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content33% 
IMG OID643476409 
ProductRhomboid family protein 
Protein accessionYP_002373518 
Protein GI218248147 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAGGACAA AACGCGCTAA AATCACTTGG TTTTTAGTCG GGTTAAATGT CCTCTATTTT 
TTGTTAGAGA TTCTTTTAGG AGGTAGTGAT AATATCAATA CCATCTATAC TCTGGGTGCA 
TTAGTTCCTC AAGTTGTTGT ACAAGGAGAA GTATGGCGAT TATTGACCGC TAATTTTTTA 
CATTATAGTT GGTTACACCT CTTCGTTAAC ATGATTGGAC TTTATTTTTT AGGTCGCTTG 
GTTGAGTTAA AATTTGGTGT TTTCCGCTAT CTAATAATTT ATTTTGTCAG TGGACTAGGA 
GCGATGGCTG CTTTTACTTA TTTTGCCATT ACAACAAATG ATACTGATTA TATTTTATTG 
GGAGCTTCCG GTGCTATTAT GGGATTAGTT GGTAGCATTA CAGCTTTGTT TCTACAGAAT 
TTTTGGCAAG AAAGATCCCG AATTGCGACA CGACGATTAC AATTTATTTT ATTGTCTATT 
GGATTACAAT TTGTTTTTGA TTTTTTTATT CCCGAAGTAA GTTTTTTGAG TCATTTATTT 
GGCTTAATCA TTGGTTTTTT TGTTGGTTTA ATATTGCTAA TCTTAAGTAA TTTATAG
 
Protein sequence
MRTKRAKITW FLVGLNVLYF LLEILLGGSD NINTIYTLGA LVPQVVVQGE VWRLLTANFL 
HYSWLHLFVN MIGLYFLGRL VELKFGVFRY LIIYFVSGLG AMAAFTYFAI TTNDTDYILL 
GASGAIMGLV GSITALFLQN FWQERSRIAT RRLQFILLSI GLQFVFDFFI PEVSFLSHLF 
GLIIGFFVGL ILLILSNL