| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC8801_2842 |
|---|
| Symbol | |
|---|
| ID | 7104369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8801 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011726 |
|---|
| Strand | + |
|---|
| Start bp | 2929733 |
|---|
| End bp | 2931676 |
|---|
| Gene Length | 1944 bp |
|---|
| Protein Length | 647 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643475878 |
|---|
| Product | squalene/oxidosqualene cyclase |
|---|
| Protein accession | YP_002372997 |
|---|
| Protein GI | 218247626 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1657] Squalene cyclase |
|---|
| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACAC AAAACAGAGT AACGTCAACT CAAAAAGTTG AGCTATCAAA CCTCACTAAA
GCTATCATCG CCAGTCAAAA TTATATAATG TCCCGACAAT ATCCTGAAGG ATACTGGTGG
GGTGAACTAG AATCGAATAT AACTCTAACT GCGGAAACTA TCTTACTCCA CAAAATTTGG
AAAACTGACA AAACCCGTCC TTTCCATAAA GTAGAAACCT ATCTGCGTCG TCAACAAAAT
GAACAGGGAG GATGGGAACT TTTTTATGGA GATGGGGGAG AATTGAGTAC CTCTGTTGAA
GCATATATGG CACTCCGTTT ATTAGGAGTT ACCCCAGAAG ATCCTGCCCT AATTCGCGCT
AAAGACTTTA TCCTTAGTCA AGGTGGTATT AGCAAAACCC GCATTTTTAC TAAGTTTCAT
CTAGCGTTAA TTGGCTGTTA TGATTGGAAA GGAATCCCGT CTATTCCGCC TTGGATTATG
CTTTTTCCTG ATAACTTCCC TTTCACAATT TATGAGATGT CGAGTTGGGC TAGGGAAAGT
ACTGTTCCTC TGCTAATTGT CTTTGATAAA AAGCCTATTT TTGAGATTGA ACCAGCCTTT
AATCTTGATG AATTGTATGC AGAAGGTGTT GAAAATGTCA AGTATGCTTT ACCTCGTAAT
CATAATTGGT CAGACATCTT TTTAGGACTG GATAAATTGT TTAAATGGAC AGAAAAAAAT
AACTTAGTTC CTTTCCATAA AAAGAGTCTC CAAGCTGCTG AAAGATGGAT GTTAAACCAT
CAACAAGAAA GCGGAGATTG GGGAGGAATT ATGCCACCGA TGGTTAACTC CTTAATTGCC
TTCAAAGTGC TGAATTACGA TGTTGCTGAT CCCTCGGTTC AACGGGGTTT TGAAGCCATT
GATCGCTTTT CCATTGAAGA AGAAGATACC TATCGGGTTC AAGCTTGTGT CTCACCTGTT
TGGGACACCG CATGGGTGAT TAGAGCCCTA GTTGACTCAG GGTTAAAACC CGATCATCCT
TCGTTAGTTA AAGCTGGTGA ATGGTTACTG GATAAACAAA TCCTTGAATA CGGAGATTGG
GCAATTAAAA ATAAACAAGG AAAACCAGGG GGTTGGGCGT TTGAATTTAT TAACCGTTTC
TATCCCGATC TCGATGATTC TGCCGTTGTT GTCATGGCCT TAAATGGCAT CAAATTACCC
GATGAAAATT GCAAAAAAGC AGCTATAAAT CGCTGCCTAG AATGGATGGC AACCATGCAA
TGTAAACCAG GGGGCTGGGC AGCTTTTGAT GTCGATAATG ATCAAGCTTG GATTAATGAA
ATTCCCTATG GCGATCTTAA AGCGATGATC GATCCCAATA CCGCAGATGT CACCGCTAGG
GTATTAGAAA TGGTGGGATC GTGTGGCTTG AAAATGGATG AAAACCGCGT TCAAAAAGCC
CTATTTTATT TAGAAAAAGA ACAGGAATCT GATGGGAGTT GGTTTGGACG ATGGGGAGTT
AACTATATCT ACGGAACCAG TGGTGTTTTA TCAGCATTAG CGGTTATTGC ACCCAATACC
CATAAACCTC AGATGGAAAA AGCCGTTAAT TGGTTAATTA GCTGCCAAAA TGAGGACGGA
GGATGGGGAG AAACCTGTTG GAGTTATAAC GATCCTTCCC TCAAAGGAAC AGGGGTTAGT
ACCGCTTCTC AAACCGCTTG GGCACTTATT GGATTATTGG ATGCGGGAGA AGCCTTAGAA
ACCTTAGCCA CAGATGCCAT AAAACGGGGA ATTAACTATT TATTAGACAC CCAAACCCCT
GACGGAACCT GGGAAGAAGC GGAGTTTACT GGAACAGGGT TTCCCTGTCA TTTCTATATC
CGTTATCACC TCTATCGTCA TTATTTTCCT TTAATTGCTT TAGGACGTTA TTGGAAAATT
GGGTTGAAAA ATCTGAAGGG GTGA
|
|---|
| Protein sequence | MQTQNRVTST QKVELSNLTK AIIASQNYIM SRQYPEGYWW GELESNITLT AETILLHKIW
KTDKTRPFHK VETYLRRQQN EQGGWELFYG DGGELSTSVE AYMALRLLGV TPEDPALIRA
KDFILSQGGI SKTRIFTKFH LALIGCYDWK GIPSIPPWIM LFPDNFPFTI YEMSSWARES
TVPLLIVFDK KPIFEIEPAF NLDELYAEGV ENVKYALPRN HNWSDIFLGL DKLFKWTEKN
NLVPFHKKSL QAAERWMLNH QQESGDWGGI MPPMVNSLIA FKVLNYDVAD PSVQRGFEAI
DRFSIEEEDT YRVQACVSPV WDTAWVIRAL VDSGLKPDHP SLVKAGEWLL DKQILEYGDW
AIKNKQGKPG GWAFEFINRF YPDLDDSAVV VMALNGIKLP DENCKKAAIN RCLEWMATMQ
CKPGGWAAFD VDNDQAWINE IPYGDLKAMI DPNTADVTAR VLEMVGSCGL KMDENRVQKA
LFYLEKEQES DGSWFGRWGV NYIYGTSGVL SALAVIAPNT HKPQMEKAVN WLISCQNEDG
GWGETCWSYN DPSLKGTGVS TASQTAWALI GLLDAGEALE TLATDAIKRG INYLLDTQTP
DGTWEEAEFT GTGFPCHFYI RYHLYRHYFP LIALGRYWKI GLKNLKG
|
|---|
| |