| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PCC8801_1349 |
|---|
| Symbol | |
|---|
| ID | 7103048 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cyanothece sp. PCC 8801 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011726 |
|---|
| Strand | + |
|---|
| Start bp | 1404603 |
|---|
| End bp | 1409339 |
|---|
| Gene Length | 4737 bp |
|---|
| Protein Length | 1578 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 643474430 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_002371567 |
|---|
| Protein GI | 218246196 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCAGA AAATCCGCCA CTTTTTAAGT CTTTTCGTCA TCGCTATAGG TTGTCTGGTG
TTACTGGGAT GGCAAATAGA CAATCCTCTA CTCAAAAGTG GATTTCCCGG CAGTCCCTCG
ACCATGAAAG CCAATACAGC CTTATGTTTT ATTTTGGCTG GTCTCTCTTT AAGACTCCTC
CAATCTCCAC GAATCACGAA ACTACGCCAT CAAATAGCCC AAGGAACCGC GTTATTGGTT
TTGATCATTG GATTATTAAC CTTGATTCAA TATGGTTTTA ATTGGAATTT AGGGATAGAC
CAATGGTTAT TTCAAGATGT TACGTCTTTA GTGAATCCTT ATCCTGGCAG AATGGGAGTC
AATACAGCAC TCAATTTTGT CTTGATGGGA ATGGCTTTGT TATGGTTGGG GAAAAACACC
ACCCAAAGCA TTTGGTTAGC TCATATTTTC AGTAGTATAG CAGCAATTAT TTCCCTTTTG
TCCTTATTTG GACATCTTTT TAGTGTTACT GTTCTGGCTA CACTGATAAT ATTTAGCACC
ACTCAGGCAC TACACACAGC CCTCACTTTT CTAATTCTCT ATAGTGGATT GCTATTAACA
ACTCCAGAAC AAGGACTGAT GGAAGTCCTT ACCAGTCCCT TAATAGGTGG AGTGGTTTCC
CGTTGGTTGA TCCCTTGGGC GATCATCTTT CCCCTAGTTT TGGATAGGTT AGCATTGCAA
GGGTTTTATT TAGGTTGGTA TGACTTAAAA GCGGCCTATG GAATACAAGC AACGTTTACG
ATTGTTTCGT TTTTACTGAT GATTTGGTGG GCAGCTTATT TACTCAATAA AATTGAACGC
GATCGCACTT CCACTAACAC TGCCCTTAAA CAAACTCAAT ATCAATTTCA ACAAGCAATA
GAAGCCGCTA ATTTAGGCAC ATGGCAATGG AATCTTTTAA ATAACAATGT GATTCTATCT
CCTCAAGCTG AAACGCTTTT AGGATTACAA AACTGCCGTT TTGAAGGCAC TAATGAAGCA
TTTTTTGACT TATTGTCTAG AGATGATCGA GAACCTTTAA TCAATTCACT CCAAGTTTCG
ATCTTAAACG CTTCTGAGTG GCAACTGGAT CATCAAATTA ATGACCGTTG GGTTAGTTTA
ATGGGTAAAT GTCTCTACGA TGAAAGCGGA CAAGCAATAC AAATGATAGG CATTATCAAA
GATATTACCC ATCGTAAGGA AACTGAACTT AAGTTAAAAA AATTCAACGA CCGGTTAGAA
AACCGTGTTA ATCAAAGAAC TGCTGAATTG AGAGAAGCGA ATCATCAACT ACAAGAAGAA
TTATTAAAAC GGCATCAAAT TGAAGAAGCC TTACAACAAA AATCTGCTGA ATTTGAAGCT
ATTTTTCAAG CGATTCCTGA TGCTATTATT TTTGCTGATA AGACTCGTCA TATTCAGAAA
GTCAATTCAG CATTTACTTA TTTATTTGGG TATCTTCCTG ACGAGGTTTA TGGCCAGACA
ACTGAGATGT TATATGTTTC TTCAGAAGAA TATTACGAAC AAGACAGAAA ACGATTTAAT
CTGACAGCAA AAGAACAAAA TAAACCCTAT GAAATTCGTT ATCGACGCAA AGATAGTACA
ATCTTTTTTA CGGAAACTGT TGGTTCTAGT GTCAAAGATA ATCAAGAAAA CGTCATAGGA
TTTGTCGGTA TTGTTCGAGA TATTAGTGAA CGGAAAGAAG CGCAAGAAAC CTTGAAAAAA
TATGCTGATG AAATTACAGA TTTATACAAT AATGCCCCTT GTGGCTACCA TTCTTTAGAT
AGTAATGGTG TTTTCATTCA TATTAATGAT ACGGAACTGA CTTGGTTAGG GTATACCCGT
GAGCAAGTCA TAGGGAAAGT CAAATTATTA GATTTACTGA TTCCTAAAAG TCGTAAAACT
TTTAGTCAGC ATTTTGAATT ATTAAAACAG GGATATAGCA TCAATAGTCT TGAACTTTCA
ATGTTACGAA GCAATGGGAC AGTTATGTCA ATTATGTTGA ATGTTAACCC GATTCAAGAT
ACTGAGGGTA ATTTTATCAT GAGTCGTGCT ACCCTATTTG ATATTAGTGA ACACAAAGAA
GCAGAGAAAA CACTACAAAA ATATGCTGAT GAAATTACAG ATTTATACAA TAATGCCCCT
TGTGGCTACC ATTCTTTAGA TAGTAATGGC GTTTTTGTGC AGATCAATAA TACAGAACTT
AAGTGGTTAG GATATACCCG CGAACAAGTG ATTGGTAAAC TCAAATTTTC AGATATTATA
ACGCCTAAGG GTTGTCAAAT TTTTCAACAA AATTTTGAAG AGTTTAAACA AAGTGGTTGG
GTTAAAGGTT TAGAGTTTGA AATGGTCTGT GCCGATGGAA AAATTTTCCC AGTAATCTTA
AATGCAACAG CCATTAAAGA TGCTGATGGA AAGTTTATTA TGAGTCGTTC TACTATTTTT
GATATTACGG AACAGCAAGC TGCACTCCGT GAACGCAAAC AAATTGAACA AGAATTACAA
AAGACAACAA CCCTACAAAA AGCTATTTTA GATAGTGCCA ACTATACCAT CATTTCCACC
ACAGAAGATG GAACCATTGT TACCTTTAAT GCTGCTGCTG AAAAATGGTT AGGTTATAGC
GCAATCGAAG TCATCGGCAA AACCACACCA GCTATCATTC ATGACCCAGA GGAAGTCGTA
CAAAAAGCCC AAGAATTATC CCTTGAGTTG GGGAGAGTTA TTGAACCCGG GTTTGAGGTA
TTTGTAGCCA AAGCCCGTTT AGGAGAACCC GATGAGGGAG AATGGTCTTA TATTCGTAAA
GATGGCAGTC GTTTTCCTGT TTTACTGTCT GTTACTGCCT TACGCAATAG CCAAGGACAG
ATTACAGGGT TTCTCGGTAT TGGCAGCGAT ATCACCCAAC GGAAGCAAGC TGAAAGGGCT
TTACGAGACA GTGAGGAACG GTTACAATTA GCCCTAGAAG CGTCTGGGGA TGGTCTATGG
GACTGGAATA TTGAGACGGG AGAGGTCTAT TTTAGTCCTC GGTATGCAGA AATGTTAGGC
TATAGAGTCA ATGAATTGCC TCCTAATGTA ACAACATGGG AAGGATTAGT TTATCCAAAA
GATATGATTT GGGTTAAAGA GATTCTCGAT TCTCATCTGA AAGATAGTAC AACTTCTTAT
GATTTTGACT ATCGAGTACG AACGAAATCT GGCCAATGGA AATGGATTGC TGATTATGGA
AAAGTAGTGG CCAGAGATGG AGAAGGCAAA CCCTTACGAA TGTTAGGAAC CCATAAAGAT
ATTAGTCAAC GCAAACACAT CGAATTAGAA TTACAGAAAG CCAAAGAAAC CGCGATCGCA
GCTAATTTAT CAAAAAGTAT CTTTTTAGCG AATATGAGTC ATGAACTTCG CACACCTCTC
AATGCGATTT TAGGCTTTAC TCAATTATTA GGAAGAGATA CGTCTTTAAG TGCTTATCAT
CAAGAACGGT TACAAATTAT TAATCGCAGT GGAGAACATT TATTAGGTCT AATTGACGAT
ATTCTTGATT TATCAAAGAT TGAAACCGGT CAAATAGCAT TATTTTTGAC GGATTGTGAT
TTATCGGGTT TACTGTTGAC TGTTGAAGAA ATGCTTAGTC CTAAAGCAGA AAGCAAAGGC
ATAAAATTGA TTATTGAAAA AGATGATAAT CTGCCTCGCT ATATTAAAAT TGATTCCAAA
AAATTGCGAC AAATATTAAT TAATTTATTA AATAATGCCA TTAAATTTAC TCATCAAGGA
ACCGTTACTT TACGGGTTAA CTTATCTAAA ATTGATCAAA AAGCAGTTAT TGTAAAGTTT
ATTGTTGAAG ATACTGGAGT GGGAATTGCT GCTGATGAAC TTGACAATTT ATTTCAACTT
TTTGTGCAAG CAGAAGCCGG AAAAAAAATT AATCAAGGAA GTGGACTCGG TTTAGCTATT
AGTCAAAAAT TAGTCCAATT AATGGGGGGT AAAATTGAGG TTAATAGTAT CTTGAACCAA
GGGAGTATTT TTTCCTTTGA AATTCCCGTA GAATTATCTT TATCAAGCAA TATTGCTACA
GAAAATCTCA AGCGAAAAAT TCTCACCCTT GCGCCAGAAC AACCAGATTA TCAGATTCTA
GTCGTTGAAG ATGTTGATGA AAATCGTCGT TTATTGGTGG AACTGCTTGC GTCAGTTGGG
TTTCAGGTAA AAGAAGCTAG TAATGGACTC GAAGCCGTTG CTATTTCCCA AACTTGGCAT
CCCCATCTTA TTTGGATGGA TATCCGAATG CCTGTTATGG ATGGCTACGA AGCTACTAGA
CGCATAAAAC AAGCAGCCTT GAGGCAAAAA CCTGTGATCA TTGCTTTAAC TGCCAGCGTT
TTTGAAGAAC AACGCGAGAC GGTTTTAGCG GCAGGTTGTG ATGATATCGT CAGTAAACCC
TTTCAAGACA CGATTATTTT CAACAAAATG GCTGAACATT TGGGGGTGCA GTATCTTTAT
GAAACTGTCT CTCAAACTCA AACACCCCCC TCTCAGATTG AATTATCATC AGAAGCGTTG
TTATCTTTAC CCTCCGAATG GTTAGAGCAA ATGTATCAAG CTGCTTACTG TGCGGATACC
GATCTCATGT TGGAATTAAT TCAACAAATA CCTCCTTCTG AGATAGCTTT AGCAAATGCC
CTAACAACCT TAGTTACTAA CTTTAATACT GACATCATTA TGGACTTGAT TCGATAA
|
|---|
| Protein sequence | MNQKIRHFLS LFVIAIGCLV LLGWQIDNPL LKSGFPGSPS TMKANTALCF ILAGLSLRLL
QSPRITKLRH QIAQGTALLV LIIGLLTLIQ YGFNWNLGID QWLFQDVTSL VNPYPGRMGV
NTALNFVLMG MALLWLGKNT TQSIWLAHIF SSIAAIISLL SLFGHLFSVT VLATLIIFST
TQALHTALTF LILYSGLLLT TPEQGLMEVL TSPLIGGVVS RWLIPWAIIF PLVLDRLALQ
GFYLGWYDLK AAYGIQATFT IVSFLLMIWW AAYLLNKIER DRTSTNTALK QTQYQFQQAI
EAANLGTWQW NLLNNNVILS PQAETLLGLQ NCRFEGTNEA FFDLLSRDDR EPLINSLQVS
ILNASEWQLD HQINDRWVSL MGKCLYDESG QAIQMIGIIK DITHRKETEL KLKKFNDRLE
NRVNQRTAEL REANHQLQEE LLKRHQIEEA LQQKSAEFEA IFQAIPDAII FADKTRHIQK
VNSAFTYLFG YLPDEVYGQT TEMLYVSSEE YYEQDRKRFN LTAKEQNKPY EIRYRRKDST
IFFTETVGSS VKDNQENVIG FVGIVRDISE RKEAQETLKK YADEITDLYN NAPCGYHSLD
SNGVFIHIND TELTWLGYTR EQVIGKVKLL DLLIPKSRKT FSQHFELLKQ GYSINSLELS
MLRSNGTVMS IMLNVNPIQD TEGNFIMSRA TLFDISEHKE AEKTLQKYAD EITDLYNNAP
CGYHSLDSNG VFVQINNTEL KWLGYTREQV IGKLKFSDII TPKGCQIFQQ NFEEFKQSGW
VKGLEFEMVC ADGKIFPVIL NATAIKDADG KFIMSRSTIF DITEQQAALR ERKQIEQELQ
KTTTLQKAIL DSANYTIIST TEDGTIVTFN AAAEKWLGYS AIEVIGKTTP AIIHDPEEVV
QKAQELSLEL GRVIEPGFEV FVAKARLGEP DEGEWSYIRK DGSRFPVLLS VTALRNSQGQ
ITGFLGIGSD ITQRKQAERA LRDSEERLQL ALEASGDGLW DWNIETGEVY FSPRYAEMLG
YRVNELPPNV TTWEGLVYPK DMIWVKEILD SHLKDSTTSY DFDYRVRTKS GQWKWIADYG
KVVARDGEGK PLRMLGTHKD ISQRKHIELE LQKAKETAIA ANLSKSIFLA NMSHELRTPL
NAILGFTQLL GRDTSLSAYH QERLQIINRS GEHLLGLIDD ILDLSKIETG QIALFLTDCD
LSGLLLTVEE MLSPKAESKG IKLIIEKDDN LPRYIKIDSK KLRQILINLL NNAIKFTHQG
TVTLRVNLSK IDQKAVIVKF IVEDTGVGIA ADELDNLFQL FVQAEAGKKI NQGSGLGLAI
SQKLVQLMGG KIEVNSILNQ GSIFSFEIPV ELSLSSNIAT ENLKRKILTL APEQPDYQIL
VVEDVDENRR LLVELLASVG FQVKEASNGL EAVAISQTWH PHLIWMDIRM PVMDGYEATR
RIKQAALRQK PVIIALTASV FEEQRETVLA AGCDDIVSKP FQDTIIFNKM AEHLGVQYLY
ETVSQTQTPP SQIELSSEAL LSLPSEWLEQ MYQAAYCADT DLMLELIQQI PPSEIALANA
LTTLVTNFNT DIIMDLIR
|
|---|
| |