Gene PCC8801_0335 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPCC8801_0335 
Symbol 
ID7104054 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCyanothece sp. PCC 8801 
KingdomBacteria 
Replicon accessionNC_011726 
Strand+ 
Start bp332950 
End bp333603 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content48% 
IMG OID643473443 
ProductRNA polymerase sigma factor RpoE 
Protein accessionYP_002370589 
Protein GI218245218 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCAAG CAATTCCTGC ATCCTGGTCA ACGGCACAAG CCAAAGAATC AGCTGCTAAA 
GTGCCTCCAG AGAAACTCTC AAACTACGAT TTGATTTTGC GCTGTCAAGA GGGATTTCAT 
CCCGATCGCG GGGCTTTCTC TGAACTTTTA AATCGCTATC AGTCCCATGT TGATAGGATT 
CTCTATCATC TGGCTCCAGA TTGGCAAGAT CGCGCGGATC TAGCCCAAGA AGTCTGGATT 
CGAGTTTATC GGAACATCAA GCGTCTCAAC GAACCCGTAA AATTTCGCGG TTGGTTAAGT 
CGCATTGCCA CTAACTTGTT CTACGATGAA CTGCGTAAAC GCAAGCGCGT CAGTCATCCG 
GTTTCTCTCG ATGCCCCCCG GCGCGTTGAT GACGGGGAAA TTGAATGGGA TATTGTCTCC 
GATTATCCCA GTCCCGACGA CAACTTAGCC ACGCGGGAAT TTTATGACCG CTTACAGGTA 
GCGATCGCTG ATTTACCCGA AGCTTTCCGC ATGACCATCG TTCTACGGGA AATCGAAGGC 
ATGGCCTACG AAGAAATCGC CCAACTGACG GGAGTTTCTT TAGGAACTGT TAAATCTCGG 
ATTGCTCGAG CTAGAGCTAA ATTACAATCA GTGCTACAAC AATATCTAGA TTAA
 
Protein sequence
MSQAIPASWS TAQAKESAAK VPPEKLSNYD LILRCQEGFH PDRGAFSELL NRYQSHVDRI 
LYHLAPDWQD RADLAQEVWI RVYRNIKRLN EPVKFRGWLS RIATNLFYDE LRKRKRVSHP 
VSLDAPRRVD DGEIEWDIVS DYPSPDDNLA TREFYDRLQV AIADLPEAFR MTIVLREIEG 
MAYEEIAQLT GVSLGTVKSR IARARAKLQS VLQQYLD