Gene PCC8801_0164 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPCC8801_0164 
Symbol 
ID7103509 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCyanothece sp. PCC 8801 
KingdomBacteria 
Replicon accessionNC_011726 
Strand- 
Start bp167406 
End bp168533 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content42% 
IMG OID643473277 
ProductRNA polymerase, sigma 70 subunit, RpoD subfamily 
Protein accessionYP_002370424 
Protein GI218245053 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACACAA CTAAAATGAT GCCAGACTAT TCCATAGCCT CTGAATTTAA TCCAGACACT 
TTTGAAACTG GAGATCTCGA ACAAGTAGAA GCTGATTTGG AGGCAGTTGA AGTTGAATTT 
TCTGAACTTT CCGATGATTT AGGCCATCAA TATCCCCCTG GATACCGCAA AACGGTTTCT 
GATGATACAG TCGGGGCATT TTTCAAAGAA ATGTCGCGTT ATCCTTTGCT AGAAGCGCAA 
GAAGAGATTG AACTAGCCTA TAGTGTCCAA TTTTTAGTAG AAGCAGAACA AAAACGCCAA 
CAACTCTTAG AAGAACTTCA ACACCCCCCA ACTAAGGCGC AATGGGCACA AGCTATGGGA 
TTTGACAGTC AACGTCAGTT TGAAAACCGC CTTTATCGGG GACGGACTGC CAAAAGAAAG 
ATGATTCGTT CAAATTTAAG GTTAGTTGTC TCGATCGCTA AACGGTATCT CAACCGGGGT 
GTTCCTTTTC TGGATCTGAT TCAAGAAGGG GCGATCGGCT TAAATCGGGC AGCAGAAAAA 
TTTGACCCCA ACAAAGGCTA TAAGTTTTCG ACCTATGCTT ATTGGTGGAT TCGTCAAGCG 
ATTACCCGTA CCATTGCTAA TGATGCGCGT ACCATTCGTT TACCGATTCA TATTGTTGAA 
AAACTCAATA AACTCAAAAA AGCACAACGA ATCCTTAAGC AAAAATTACA ACGGAATCCT 
AACGAAAAAG AACTCGCCCA AGAGTTAGAA ATGACTCCTC CCCAACTGCG TCAGTTATTA 
CAATTACGCC GACAATCTTT ATCTTTAAAT CATCGAGTAG GGAAGGGAGA AGATACGGAA 
TTAGTGGACT TACTCGAAGA TCAAGATTTA CAACTTCCCG AAGAACAAAT GAACGAGGGA 
ATGTTACGCA ATGAAATTTC AGCCGTGTTA AGTGATGTCC TCACCGAACG GGAAAAAGAT 
GTTATTTCCC TGCGCTATGG ATTATCCACC AGTCAACCCC ATACCTTAGA AGAAGTCGGA 
GGAATGTTTA ACTTATCCCG CGAACGGGTG CGCCAAATTC AGAGTAAAGC CATGCGTAAA 
TTACGCCGCC CTCAAGTTGC TCGTCGTCTT AAAGGGTGGT TAAGTTAG
 
Protein sequence
MNTTKMMPDY SIASEFNPDT FETGDLEQVE ADLEAVEVEF SELSDDLGHQ YPPGYRKTVS 
DDTVGAFFKE MSRYPLLEAQ EEIELAYSVQ FLVEAEQKRQ QLLEELQHPP TKAQWAQAMG 
FDSQRQFENR LYRGRTAKRK MIRSNLRLVV SIAKRYLNRG VPFLDLIQEG AIGLNRAAEK 
FDPNKGYKFS TYAYWWIRQA ITRTIANDAR TIRLPIHIVE KLNKLKKAQR ILKQKLQRNP 
NEKELAQELE MTPPQLRQLL QLRRQSLSLN HRVGKGEDTE LVDLLEDQDL QLPEEQMNEG 
MLRNEISAVL SDVLTEREKD VISLRYGLST SQPHTLEEVG GMFNLSRERV RQIQSKAMRK 
LRRPQVARRL KGWLS