Gene PCC8801_0154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPCC8801_0154 
Symbol 
ID7104737 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCyanothece sp. PCC 8801 
KingdomBacteria 
Replicon accessionNC_011726 
Strand
Start bp157321 
End bp158460 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content47% 
IMG OID643473268 
ProductRNA polymerase, sigma 70 subunit, RpoD subfamily 
Protein accessionYP_002370415 
Protein GI218245044 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGCAGG CTAATGACCT ACTAACCCTT ACAGAGCCTC AAATCGATTT ACCCTTCTTC 
ATCGATCCCG ATGAAGGCGA AGAAATAGAG CTAATGACTG ATGAGGCTCT TGACGAGGTA
ATGGCTAACC CAGAAGGGAA AAAAACCCGA AAGCTTAGTG CTTCTCGCCG CCGCGATCCC
AACAAGAAAA AGCCTTATAC AGAAGACTCC ATTCGGATTT ACCTCCAAGA AATCGGTCGC
ATTCGACTAT TGCGCGCGGA AGAAGAGATT GAACTGGCGC GTAAAATTGC GGATTTACTG
GAATTAGAGA GAATCCGCGA AAAAATGACC GAACACATGG GACGCTTCCC CACGGATCTC
GAATGGTCAC AGGCGATCAA TATGGAGTGG CACGCTTTTC AGCGTCGTCT CTATCTGGGG
CGCAAAGCCA AGGACAAAAT GGTCCATTCT AACCTGCGTC TAGTGGTTTC GATTGCCAAA
AAATACATGA ATCGGGGGTT ATCTTTTCAA GATTTAATTC AAGAAGGTTC CCTGGGCTTA
ATTCGGGCGG CTGAAAAGTT TGACCACGAA AAAGGGTATA AGTTTTCGAC TTACGCCACT
TGGTGGATTC GTCAAGCCAT TACCAGAGCG ATCGCTGATC AATCCCGTAC GATTCGTCTC
CCAGTACACC TGTACGAAAC CATCTCTCGG ATTAAGAAAA CCACCAAGAT TCTCTCCCAA
GAGATGCGCC GAAAACCGAC AGAAGAGGAA ATTGCGACTC GCATGGAGAT GACCATCGAA
AAGTTACGGT TTATTGCTAA ATCCGCCCAA TTACCCATAT CCCTTGAAAC CCCCATTGGT
AAGGAAGAAG ATTCCCGCCT GGGGGATTTT ATTGAGGCTG ATGGGGAAAA CCCTGAAGAT
GAGGTGTCGA AAAATCTCCT ACGCGAAGAT CTCGAAAATG TCCTCGATAC CCTTAGTCCA
CGGGAACGGG ATGTGCTGCG GTTGCGGTAC GGGTTAGACG ATGGACGAAT GAAAACCCTC
GAAGAAATTG GACAGATCTT TAATGTTACC CGTGAGAGAA TCCGTCAAAT TGAGGCTAAA
GCACTACGAA AGCTCCGTCA TCCCAACCGC AATAGTATTC TTAAAGAATA CATTCGGTAA
 
Protein sequence
MTQANDLLTL TEPQIDLPFF IDPDEGEEIE LMTDEALDEV MANPEGKKTR KLSASRRRDP 
NKKKPYTEDS IRIYLQEIGR IRLLRAEEEI ELARKIADLL ELERIREKMT EHMGRFPTDL
EWSQAINMEW HAFQRRLYLG RKAKDKMVHS NLRLVVSIAK KYMNRGLSFQ DLIQEGSLGL
IRAAEKFDHE KGYKFSTYAT WWIRQAITRA IADQSRTIRL PVHLYETISR IKKTTKILSQ
EMRRKPTEEE IATRMEMTIE KLRFIAKSAQ LPISLETPIG KEEDSRLGDF IEADGENPED
EVSKNLLRED LENVLDTLSP RERDVLRLRY GLDDGRMKTL EEIGQIFNVT RERIRQIEAK
ALRKLRHPNR NSILKEYIR