| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BCB4264_A5243 |
|---|
| Symbol | vacB |
|---|
| ID | 7096300 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bacillus cereus B4264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011725 |
|---|
| Strand | - |
|---|
| Start bp | 5043198 |
|---|
| End bp | 5045624 |
|---|
| Gene Length | 2427 bp |
|---|
| Protein Length | 808 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 643472748 |
|---|
| Product | ribonuclease R |
|---|
| Protein accession | YP_002369900 |
|---|
| Protein GI | 218235949 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGAAGAAA TCATACAAGA ACATATTGAT AAGTTGTTAT TATTTATGAG AGAAGAAGCG
TATAAACCGC TAACGATACA AGAGTTAGAA GAGGCATTTG GGATTGAAGG TTCTGAGGGC
TTTAAAGATT TCGTAAAGGC ACTTGTAACG ATGGAAGAAA AGGGACTTGT TATTCGTACT
CGTAGCAACC GTTACGGTCT TCCTGAAAAG ATGAATTTAA TACGCGGTAA GTTAATTGGA
CATGCACGTG GTTTTGCATT CGTTGTACCA GATGAGAAGA AAACGGGAGA CGATGACCTT
TTCATACCGC CTACAGAATT AAACGGTGCG CTTCATGGCG ATACAGTATT AGCACGCCTT
AGTTCCCAAT CGAGTGGTTC GCGTCAAGAA GGTTCAATTG TACGCATTTT AGAACGCGGA
ACGAAAGAGT TAGTTGGTAC ATATACAGAA TCGAAAAACT TTGGGTTCGT TATACCTGAC
AATAAGCGCT GGACAAGTGA CATTTTCGTA TTGAAAAGTG CATCTATGGG CGCTGTAGAA
GGTCATAAAG TAGTTGTGAA AATTACGAGC TATCCAGAGA ATCGTTTAAG TGCAGAAGGT
GAAGTTATTC AAATTCTAGG TCATAAAAAT GATCCAGGAG TAGATATTTT ATCTGTCATT
CATAAACATC ACTTGCCTTT AGCGTTCCCT GAAGAAGTGA TGGAACATGC CAACAGTGTA
CCAGAAACGA TTTCAGAAGA AGATTTAAAA GATCGCCGTG ATCTACGTGA CCAAATGATC
GTAACGATTG ACGGTGCAGA CGCAAAAGAT TTAGATGATG CTGTTACAGT AACGAAACTT
GAGAACGGTA ACTACAAGCT AGGCGTTCAC ATTGCGGATG TAAGTCATTA CGTTCAAGAA
GGTTCTCCAA TTGATGTAGA AGCAGCGGAA AGAGCGACGA GTGTGTATCT TGTTGACCGT
GTAATTCCGA TGATTCCACA CCGTCTATCT AACGGTATTT GTTCATTAAA TCCGAAAGTA
GACCGTCTGA CATTATCTTG TGAAATGGAA ATCAACAACT TAGGTGATGT TGTTAAACAC
GAGATTTTCC AAAGTGTAAT TAAAACGACA GAGCGTATGA CTTATGCTGA CGTAAGAAGC
ATTTTAGAAG ATGAGGACGA AGAGTTAATT AAGCGTTATG AGCCGCTCGT ACCGATGTTT
AAAGAGATGG GTCAATTGGC ACAAATTTTA CGTGAAAAAC GTATGCGCCG TGGTGCAATT
GACTTTGACT TTAAAGAAGC GAAAGTATTA GTGGATGAAG AAGGAAAACC GACAGACGTT
GTCATGCGCG ATCGTTCTGT ATCAGAGAAG TTAATTGAAG AATTTATGCT TGTTGCGAAT
GAAACAGTAG CAGAGCACTT CCACTGGATG AACGTACCAT TCATGTACCG TGTCCATGAA
GATCCGAAAG AAGATAAGTT AGAGCGTTTC TTCGAGTTTG TAACGAACTT CGGATATGCG
GTAAAAGGAC GTGCGAATGA AGTACATCCT CGTGCGCTGC AACAAATTCT TGAAATGGTT
CAAGGGCAGC CAGAAGAAGT AGTTATTTCA ACAGTAATGC TTCGTTCTAT GAAGCAAGCG
CGTTACGATG CGGATAGCTT AGGACATTTC GGTTTATCAA CTGAGTTCTA CACGCATTTC
ACATCACCAA TTCGTCGTTA CCCGGATACA ATCGTTCATA GATTAATTCG TGAATACATT
ATTAACGGTA AAGTCGACAA CGAAACGCAA GCAAAATGGC GTGAAAAATT ACCTGAGATT
GCAGAGCATT CTTCTAATAT GGAACGTCGT GCTGTTGAAG CAGAGCGTGA AACAGATGAG
ATGAAAAAAG CAGAGTATAT GGTTGATAAG ATCGGTGAAG AGTATGACGG TATGATTAGC
TCTGTAACAA ACTTCGGTTT ATTCGTAGAG CTTCCAAATA CAATTGAAGG TCTTGTACAC
GTTAGTTATT TAACGGATGA TTACTACCGT TATGACGAGC AACATTTCGC TATGATCGGA
GAACGTACAG GAAACGTATT CCGCATCGGT GACGAAATTA CAATTCGCGT TATTAACGTA
AACAAAGACG AGCGTGCAAT CGACTTTGAA ATCGTTGGCA TGAAAGGCAC ACCTCGTCGT
AAGTTCAAAG ATCGTCCAGT CGTTATTGAG CAGCCAAGAA CAGGCAGAAA GAAACGCGGT
GGACGTAGCG AGCGCAGTAA TGAGCGCGGC GGTGAACGTG GCACAGGTAG AAAATTTGAC
CGTGGTGGTA AAGGAAAAGG AAGAGGATCT GCATCTGCAT CCGCTTCTGC TAGCCAGCCG
GGAAAAAAAG ATGGTAACGG TAAGAAGAAA AAAGCATTCT TCGAAAACGT ACCAGGATTC
AAGAAGAAAA AGAAAAAGCG TAAGTAA
|
|---|
| Protein sequence | MEEIIQEHID KLLLFMREEA YKPLTIQELE EAFGIEGSEG FKDFVKALVT MEEKGLVIRT
RSNRYGLPEK MNLIRGKLIG HARGFAFVVP DEKKTGDDDL FIPPTELNGA LHGDTVLARL
SSQSSGSRQE GSIVRILERG TKELVGTYTE SKNFGFVIPD NKRWTSDIFV LKSASMGAVE
GHKVVVKITS YPENRLSAEG EVIQILGHKN DPGVDILSVI HKHHLPLAFP EEVMEHANSV
PETISEEDLK DRRDLRDQMI VTIDGADAKD LDDAVTVTKL ENGNYKLGVH IADVSHYVQE
GSPIDVEAAE RATSVYLVDR VIPMIPHRLS NGICSLNPKV DRLTLSCEME INNLGDVVKH
EIFQSVIKTT ERMTYADVRS ILEDEDEELI KRYEPLVPMF KEMGQLAQIL REKRMRRGAI
DFDFKEAKVL VDEEGKPTDV VMRDRSVSEK LIEEFMLVAN ETVAEHFHWM NVPFMYRVHE
DPKEDKLERF FEFVTNFGYA VKGRANEVHP RALQQILEMV QGQPEEVVIS TVMLRSMKQA
RYDADSLGHF GLSTEFYTHF TSPIRRYPDT IVHRLIREYI INGKVDNETQ AKWREKLPEI
AEHSSNMERR AVEAERETDE MKKAEYMVDK IGEEYDGMIS SVTNFGLFVE LPNTIEGLVH
VSYLTDDYYR YDEQHFAMIG ERTGNVFRIG DEITIRVINV NKDERAIDFE IVGMKGTPRR
KFKDRPVVIE QPRTGRKKRG GRSERSNERG GERGTGRKFD RGGKGKGRGS ASASASASQP
GKKDGNGKKK KAFFENVPGF KKKKKKRK
|
|---|
| |