Gene PHATRDRAFT_50589 details

Gene Information

• Locus tag: PHATRDRAFT_50589
• ID: 7199409
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011699
• Strand: -
• Start bp: 244161
• End bp: 246311
• Gene Length: 2151 bp
• Protein Length: 668 aa
• GC content: 48%
• Product: predicted protein
• Protein accession: XP_002185546
• Protein GI: 219130803

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.00629858
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAAGGAT CCGTGACCAA CACCTACCAC CCAATTCCGC AGAACTGGCA TTCGCAAGGG 
TACTTACATT TACTATAAGG TCGATCCACA CAGCACATGA ACAGGTCCAC AGCCGGTGGT 
CCGTCCGCAA TCGGGGAGCG CCAGATGGAA ACCATGGGGA GTCCCGTCGA CGACGTGGAC 
GCCATAGATA TGGACGAGGA GGAGTCGATG CCAGATAATT TCGAAGCTCG TTTTCCGCTT 
TCGAGGCATA TTGCCAGCTG GAGATTCTGG TGGGCCTTTG CCAAGTACCC GTTGGCTCTA 
CTCCTCATCA ACACGGTTGT GTTGCTTTTC CTGTCCCTGT ACAATCCAGA AAATGACTAC 
CAAGACACCT ATAACGATGA TTGGGAGACG AGCTCGTTAA TGCTCATGAT GACGAGGTTT 
CGTGTCAAAT GCGTAGGGGT GGTAGTGATG GCATTCTTGG ATACCATTTT CCTGTACTTG 
GCCGCCGCGT TTCTTCGGAA GGATATGCAC TTGCTAGTGA GGGAGCATCA AGCACAGGAC 
TCGCAAGCAC AAAGCGCCGA GACGCAGAGT CCGATATGGA GAACAGCGGC ACCGCTCCCG 
CAATTGGATT TGAAGGTACT GGACCACGTG CACGCTCGAG TCGCGCAAAA GGTAGACGCG 
TATCTTCATC GCGATCCAGC ATGGCAATCA ACGTTTCCCT TTTTGGTCAG CTTGTTGTAC 
CTGCTTATGG CACTCGCGGC GACGGCTTCT CTGACTTCGG TTTTGCTGCT GTTATTTGTA 
AATAGCGCGC AAGGAATGTC TCTGTGTACA GCAAGGGACA CCAATGTCAT CAAATTCAAT 
CAGACAGATG GTGTCCCGGA AGATTTGCTA GACTGGGCGA ACGAAGGATC CTCCGTTGAA 
GCAACATACG TCCGTCTATC CGATGGGACT CTTTACTTCC GAGGGTCTGC AGCATATATA 
CAAGAACCTA CAATGCTTTC TGTTTACCAT GGTATGAGGA TCAACGGGTT TCATTCTATA 
GAATCTGACA GGGATTCAAA CCTAAGGCTG CTTGCGTCCA AGGCGGATGG AAGTGTTTCC 
ATGTATAGCC ATGTGAGCAG CCCTACGTTT TTTGCAAGTG TCTTGGAAGA CAACAGTGGA 
ACATCAACTT CCTTCTGTTT CTTGTACAAG GAGGTGGTCC AGGAAGGCTA CGATATAGAT 
ATCTTCCCCT CTGTCCCCTA CGCGAGTAGT GTCTTCTCTG TTGCTTGCAT TGACTCTAAA 
GAAGATGCCA ATCAAGAAGT TCGGAACACT ACTTTTTCCA GCAGCAACCA ACAGGAACTG 
AGATCATGTT TGGGCAGAGC TTATGATGGT GAGTACTGGG TACGCCAGGA TGGAGTAGAT 
AGGCATTTTT GGTCCATCCA AGAAGTGCAA ATAGTACGAG TGAATCCACA AACCATGGTG 
GCTACAACAA TTGCCAATAA AACCCATTCC CGTGACTTTC GACCGGTGTG GTCCAGAGAA 
GGAAAATGCA ACCTTCGGAT CCAAGAAATT GGATATAGTG CTGCTGCAGT ATTTCTGTTT 
ATTTTTGCTC TTGCAATGGA ACAAACTTTG AAAATTCCAT CAAGTGCGGG TTGCTTGGCT 
ATGTCTATCG TTGCAACTCT GACTTGGATA GATGAAACGT TGGCAGGCTT GCTAAGTCTC 
GTGCTGATTA TTGCGACAGC TTTTTACTTG ATCATGGGGT CACCCAGCTT AGTTGTCCGA 
GAGCAGATGC TGTGGGGAAT GTACTGCGTT ATCATCCTGC AACTGGTTTT CGAATTTTAC 
CCCGTGGTGG TTTTTGGCCT GGGTCTGGGC ATTGCTCGGG ACCATCCCGT ACTTCAGCTG 
GGTGGCTGGA TTGGAGGACC ATTTGCTGTC TTTTTTCTTT TGTTCTACTC AATCACTGAT 
TCCATTGATT GGTTGGAATT GGTGGCGTTT ATTCCATTGA GTGTCCTTAT TGCTTGCGGG 
ATGGTGACGG CAGGGAATCA ACTCACAAGA TACCGCCCAT TTCTGCTGTT CTACCTGAGG 
CGTTTGTGGC GATCGCTTTG CCTGAAAATA CGGCCGCAAA TTCGACAACA AAGCAGAAGC 
TGAGAAATGG ACTTTTATAC ACAGATTGAA AGGCATGTTG ACTAGCTGCT G 

 

Protein sequence

MNRSTAGGPS AIGERQMETM GSPVDDVDAI DMDEEESMPD NFEARFPLSR HIASWRFWWA 
FAKYPLALLL INTVVLLFLS LYNPENDYQD TYNDDWETSS LMLMMTRFRV KCVGVVVMAF 
LDTIFLYLAA AFLRKDMHLL VREHQAQDSQ AQSAETQSPI WRTAAPLPQL DLKVLDHVHA 
RVAQKVDAYL HRDPAWQSTF PFLVSLLYLL MALAATASLT SVLLLLFVNS AQGMSLCTAR 
DTNVIKFNQT DGVPEDLLDW ANEGSSVEAT YVRLSDGTLY FRGSAAYIQE PTMLSVYHGM 
RINGFHSIES DRDSNLRLLA SKADGSVSMY SHVSSPTFFA SVLEDNSGTS TSFCFLYKEV 
VQEGYDIDIF PSVPYASSVF SVACIDSKED ANQEVRNTTF SSSNQQELRS CLGRAYDGEY 
WVRQDGVDRH FWSIQEVQIV RVNPQTMVAT TIANKTHSRD FRPVWSREGK CNLRIQEIGY 
SAAAVFLFIF ALAMEQTLKI PSSAGCLAMS IVATLTWIDE TLAGLLSLVL IIATAFYLIM 
GSPSLVVREQ MLWGMYCVII LQLVFEFYPV VVFGLGLGIA RDHPVLQLGG WIGGPFAVFF 
LLFYSITDSI DWLELVAFIP LSVLIACGMV TAGNQLTRYR PFLLFYLRRL WRSLCLKIRP 
QIRQQSRS