| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_41562 |
|---|
| Symbol | |
|---|
| ID | 7199400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011699 |
|---|
| Strand | + |
|---|
| Start bp | 175042 |
|---|
| End bp | 176607 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002185495 |
|---|
| Protein GI | 219130697 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.0981287 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAAT TTAAAGTTAC AGCTTCCATT CTGCTCAGTG CTTTGCTTTT GCAAGGATCG
CAGGCTAAGT TTTTCTCGGA GGACTCTGAG GTCCTCACTG TCAATCGTGT ACCAAAGATT
AGCAAAAGTG GCAACAAAAG CCAACCTCTA AGGGAACCGG AATCGGTGCC TTCGTCGTCT
TTTTCGGGCG GTTTTATTAC AGCCGAAAAG GAAGTTTCGA CTGCCTTCCG AGACCGTACC
AGTACCGCTT TTGGCCGAGT CTCCTGGGGA AACAATACTC TCAAACGGAG CAAAAGGACA
AAGAGTGCCA AAGGCTCCGA CCCAGGAAGC TCAGATTCAA CTCCGGGCAG CGAGATTCTA
ACTGTCATTC GTCAACGGCA AAAACGAGGG GGTAAGGGTT CGAGCAAGGA TGACAACGCT
TTACGAACGA TTGAGCCAAA AGAGAGCCCC ACTCCGTCAC CGGTGGACCT TTCCACTTTT
TCTCCCGGTA TGATCGACGA AACGCCCCAA CCCAGCCCCG AAGAAACTTT TGCCCCCACA
TTGACTGGAA CGACGCCTGT ACCAAGCATA ATTCAGACAA ATCCTGGAGT ACTGGCAACA
CCATTTCCTA CTGACGAAGA TGCCTTGCCG ACGCCTTTTC CTACATTCTT TCCAACTGCG
AACGAAAACC CTTTCCCTAC CATTCCACAA AGTACATTCT TGCCCACTCC CACACCTCTA
TGCTTCGAGT CATCGCTGGA ATTGCAATTC GCGGTAGACG AGTATTTGCT AGACAGCAGT
CCCGACACGG AAGTGGCGTT CTTCTACGGG CATCCGATGG AAGAGTGGTG CGTCTCCAGC
ATCGTGGACT TCAGCAACCT TTTCTCTGCC TTTCGGAATT CGGACACCAG TACCTTCAAT
GAGCCTCTGA ATGGTTGGGA TATGTCGAGT GCCGAAACAC TCGAAAACAT GTTCGCGGGG
GCCGAAAGCT TCGACCAACC CCTGTTTGAT TGGGATACGT CCAACGTGTC TACTATGACT
CGAGCGTTTA GTGGAGCAGA AAGTTTCAAC AGCGACATAC GAGCTTGGGA TACCTCAAAC
GTCCTAGATA TGCAAGCAAT GTTTGCGGGA GCTATCAGCT TTAATGGCAA TATTGCTTCT
TGGGACATTC GAAATGTGGA GAATTTGTCT TTCATGTTCG CTGAAGCAAC GAGCTTTGCT
GGGGATTTAT CGCAATGGGA ACCACTCAGT GCCATTTCAA TGGTGCAAAT GTTTCTCGGT
GCTAGCTCAT TCAACAGCGA TATTTCGAGA TGGGACGTAT CGGCAGTCGA ATTATTCTCG
AGTATGTTCA ACGAAGCGAT TTCCTTCAAC CAAGACATAT CTGGATTCGA TTTGTCGAGT
GCGACCAATT TGGACCGTAT GATGTTCATG GCAGAGTCCT TTAGCCAAGA TGTATGCAAC
TGGGGTTCTA CGCTTGACCC ATTTTTGGCT CCGTTCGAAG TTTTTCAAGG CACGGATTGC
CCAAACGTCT CGGATCCCAG CCTTGATAAC ACCCCTCCAG GTCCCCTTTG CTTTCAATGT
TCGTAG
|
|---|
| Protein sequence | MAQFKVTASI LLSALLLQGS QAKFFSEDSE VLTVNRVPKI SKSGNKSQPL REPESVPSSS
FSGGFITAEK EVSTAFRDRT STAFGRVSWG NNTLKRSKRT KSAKGSDPGS SDSTPGSEIL
TVIRQRQKRG GKGSSKDDNA LRTIEPKESP TPSPVDLSTF SPGMIDETPQ PSPEETFAPT
LTGTTPVPSI IQTNPGVLAT PFPTDEDALP TPFPTFFPTA NENPFPTIPQ STFLPTPTPL
CFESSLELQF AVDEYLLDSS PDTEVAFFYG HPMEEWCVSS IVDFSNLFSA FRNSDTSTFN
EPLNGWDMSS AETLENMFAG AESFDQPLFD WDTSNVSTMT RAFSGAESFN SDIRAWDTSN
VLDMQAMFAG AISFNGNIAS WDIRNVENLS FMFAEATSFA GDLSQWEPLS AISMVQMFLG
ASSFNSDISR WDVSAVELFS SMFNEAISFN QDISGFDLSS ATNLDRMMFM AESFSQDVCN
WGSTLDPFLA PFEVFQGTDC PNVSDPSLDN TPPGPLCFQC S
|
|---|
| |