| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_55197 |
|---|
| Symbol | |
|---|
| ID | 7199248 |
|---|
| Type | CDS |
|---|
| Is gene spliced | Yes |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011698 |
|---|
| Strand | + |
|---|
| Start bp | 46605 |
|---|
| End bp | 50076 |
|---|
| Gene Length | 3472 bp |
|---|
| Protein Length | 911 aa |
|---|
| Translation table | |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | oligosaccharyl transferase |
|---|
| Protein accession | XP_002185367 |
|---|
| Protein GI | 219130427 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CTTGACTCTC TCCTGCTCTC TCTCTCTTGG AGAAAATTGC ACTCGTGTGT ACATTGGTGT
GTGTCGAATT GCCATGGTAG ATTTAGACAA GAAGACGAAG AAGAACAACG GCAGCGTGAA
GACGGTAACC AACGGCCAGA CCAATGCGCC GTCATCGTCG TCGAACATGA ACGATGCGAG
TCGTCCCCCC GTTACGGAAG CTACCGTAGA TAGCACGGTG CGCAGTGTTT CGCGTTTGAT
CCAAGCCTTA ATCTTCGCGG CTGTCCTTCA AGTACTCTAC CGAGCGCTCG TGGAAGCCTA
CACGATTCGA TTGCACGCCA TTAACGAATA CGGACGCGTC ATTCACGAGT TTGATCCTTA
CTTGTAAGTC CTCCGTATCG ACAAGCCTGT TATAGTGGCA GTTATCCTGA CGCGTACCCC
GCAACTCACT GTACCCTTCC CTTTTCTGCT TGTAATATCT ACTGTACTGT CGGTGCTGGT
ATCACCGTCT ACCTTTGCTA ACGTCGTTCG ATCGTTGGCT GTCGGTTTTA ATTATCTTCT
CGATCCGTAC CGGACAGCAA CTACCGCGCT ACGGAGTACC TGTACGAGCA CGGATGGCAA
GCCTTCTGCA CCTGGTTCGA CTACCTTGTC TGGTATCCTT TGGGTCGTCC CGTTGGTACC
ACAATCTACC CCGGTATGCA GGTCACCGCC GTCGCTTTGA AGAACTATGT ACTCACCGAT
ATGTCCATCA ACGACATTTG CTGCTTCATC CCCGCCTGGT TCGGGGTCAC AGCGACAATG
GCGGTCTTTG CGTTGTCTTT CGAGTGCACC CGATCCACCG CACGCTACGA GTCCATCTTT
AGTACCATCC CTTTGGTCAA GGATATCTAC CAGCTTTTGT TCAAACCGGT GCTGGAGTTT
GTCTGGAACG GCATTTTGGT CAAGATTACC GGGGGTGACT GGGGATTGGG TCGCGTGCAC
CGCAAGCCAA CGGCACCGGC AGGCTCCTTT CGGACTCCCT GGATGTGTGC CACGGCGGCG
GCTTGGATTA TGAGCATTGT ACCGGCACAT CTCTTGCGCT CCATTGGTGG CGGTTACGAC
AACGAAAGCA TCGCCATGAC GGCCATGGTT CTGACGTTTG CCGTCTGGAC GCGGGCCTTA
CGAGATACTC CGGAAACGAA CGGATCCGGC TGGTTACCCG GGACCATGCT GTGGGGTGCT
TTGACCGGGG TAGCCTATTT TTACATGGTG GCAGCGTGGG GTGGCTACGT TTTTGTCCTG
AACGTGATCG GCGTGCACGC GTCGGTGTTG GTGCTGCTCG GACGCTATTC AACCAAACTG
CATCGGGCCT ACTCCTGCTT TTACGTGGTC GGTACCGCGC TGGCGATTCA GGTACCCGTT
GTGGGATGGA CGCCCCTCAA GAGCCTGGAG CAAATGGGAC CACTCGCGGC CTTTTTGGGA
ATGCAACTCT TGGAAGTCTG TGCCGTCATT CAGCGCAAGA ACCCGGGCAT GTCCCAGAAA
AAAATCTGGA AGCTGCGGAT GCAGGTCTTT GGTGGCGCTG GATTGATTGG CGCGGCCCTT
GTTTTTCTGC TCTTGCCAAA CGGCTACTTT GGTCCGTTCA GCTCCCGGGT ACGTGGACTC
TTTGTGAAGC ACACCAAGAC TGGCAATCCG CTGGTCGATT CCGTTGCGGA ACATCAAGCC
GCCTCTCCGG AAGCGTATTT TCAATATCTA CACAAGGTGT GCTACCTAGC TCCCGTTGGA
CTGCTCATGG TTTGTTTGTT TTCCTTCAAC GACTCGAGCT CGTTTTTGCT CGTGTACGGT
GTGGCGGCGT ACTTCTTTTC TCACAAGATG GTCCGGCTTA TCTTGCTGAC GGCGCCGATT
GCATCCGTTA CGGCTGGCAT TGCTTTGGGT AAATTTGTCT CGTGGGCCGT GGATGCCATT
GCGCTGGATC AATCTCTGGA TTTGTGGGCC TTTTTGCTGG GCAACTCGAC TACCGAAGCA
TCCACAAACG GAACTGCCGT CGCGTCCAAG GCCAAGCCAA AAAAAGGCAA GCGGAATACT
AACGGAGATG GAGAAGACGA TGTTGTAGCA GCGGGCCAAC CCCTCTATAT GCGCATCGTT
CGTTTGGCTA TCTTTGGCGC AGTCGCTTTC CAGTCCATCC CCGAGTTCAA AAGCTTTTGG
CAAATTTCCC ACGAAGTTGC GGTACAAGTC TCGCACCCGA CAATTATACA AAAAGCACAG
CGTAGGGATA CTGGAGAAAC AATCTTTATC GACGACTACC GTCAGGCATA TTTGTGGCTC
AAGAACAATA CTCCGGAAGA CGCCCGCATT ATGGCTTGGT GGGATTACGG GTACCAGATA
ACCGGCATCG GGAATCGCAC CACTATTGCC GACGGAAACA CTTGGAACCA CGAGCACATT
GCCCTCTTGG GACGGACGTT AACGGCCCCA GAAAAGGAAG GTCACCGCAT TGCTCGCCAT
CTCGCTGATT ATGTTCTCGT TTGGGCCGGC GGCGGTGGCG ACGACGTGGC GAAGTCTCCA
CACTTGCGAC GCATTGCCAA TTCGGTGTAC CGTGGCTTGT GCCGAGAGCC GACTTGCCGA
GACTTTGGCT TTCAAGTAAG TGCCGTGATT TGTTGTCCGT TTACCATCTT TGGTTTGGGC
TAATAATTGT ATTACTTTTC GTGTAGAGTA AGGGAAACCC GACCGCTGAT ATGCGAAAGA
GTCTCTTGTA CAAGCTGCAC AGTCACAATT TGGTCCCTGA TGTGCAGGCC GACCGAAATC
GATTCCGTGA AGTTTTCACC AGTACATACG GAAAGGTTCG AATTTACAAA ATCTTGAGTG
TTTCCAAGGA GAGCAAAGAT TGGGTTGCGA ATCCGGAAAA TCGAGTTTGT GATGCCCCAG
GTAGCTGGAT GTGCCGGGGG CAGTACCCAC CGGCTCTCAA GAAAGTGTTG AGTGAAAAGA
AAGATTTCAA GCAGTTGGAA GACTTCAATG CGAAGAGCGA CCATGACGAT TCGGACTATC
AACGTGAGTA CATGGAAAAT GTCATGCACA AGAAGCAAGT CCCGCGTCCA AGAGACTCTA
AGAGTGGGCA GGAACCAAAA GAACCAAAGG AGCAGCCCTC AGCGAGGCAC GAAGTAGTTA
AACTTTCCGA TGAAAAGATT GAGGCCCTGA ACCAAAATTG GGAGAACAAC GAGCGCACCA
CACTTATGTG GGAATTGATA TCAGAAAATC GCTTGAATGA TATGGTGCAA CTATTGTACG
AATCCCCTGA ATTGGTGCAC CTCCGCAGTG CCGATGGGCG TGGACCTATG TTCTGGGCTC
ACGAGTATGG CAGATCGCAA TTCCTTCAAG TCTTTCGACA GCTAGGCGTT CGAGAAGACC
GAAAGGATGC TGTTGGAAAA ACGGCTCTCG ACATGGCGTA GGTCCAACCA GTTATATGAC
TACACATGGT TAAGAGCTTT ACTAAAATTA GCCACCGATT TTGCATTCGT CA
|
|---|
| Protein sequence | MVDLDKKTKK NNGSVKTVTN GQTNAPSSSS NMNDASRPPV TEATVDSTVR SVSRLIQALI
FAAVLQVLYR ALVEAYTIRL HAINEYGRVI HEFDPYFNYR ATEYLYEHGW QAFCTWFDYL
VWYPLGRPVG TTIYPGMQVT AVALKNYVLT DMSINDICCF IPAWFGVTAT MAVFALSFEC
TRSTARYDIV PAHLLRSIGG GYDNESIAMT AMVLTFAVWT RALRDTPETN GSGWLPGTML
WGALTGVAYF YMVAAWGGYV FVLNVIGVHA SVLVLLGRYS TKLHRAYSCF YVVGTALAIQ
VPVVGWTPLK SLEQMGPLAA FLGMQLLEVC AVIQRKNPGM SQKKIWKLRM QVFGGAGLIG
AALVFLLLPN GYFGPFSSRV RGLFVKHTKT GNPLVDSVAE HQAASPEAYF QYLHKVCYLA
PVGLLMVCLF SFNDSSSFLL VYGVAAYFFS HKMVRLILLT APIASVTAGI ALGKFVSWAR
NTNGDGEDDV VAAGQPLYMR IVRLAIFGAV AFQSIPEFKS FWQISHEVAV QVSHPTIIQK
AQRRDTGETI FIDDYRQAYL WLKNNTPEDA RIMAWWDYGY QITGIGNRTT IADGNTWNHE
HIALLGRTLT APEKEGHRIA RHLADYVLVW AGGGGDDVAK SPHLRRIANS VYRGLCREPT
CRDFGFQSKG NPTADMRKSL LYKLHSHNLV PDVQADRNRF REVFTSTYGK VRIYKILSVS
KESKDWVANP ENRVCDAPGS WMCRGQYPPA LKKVLSEKKD FKQLEDFNAK SDHDDSDYQR
EYMENVMHKK QVPRPRDSKS GQEPKEPKEQ PSARHEVVKL SDEKIEALNQ NWENNERTTL
MWELISENRL NDMVQLLYES PELVHLRSAD GRGPMFWAHE YGRSQFLQVF RQLGVREDRK
DAVGKTALDM A
|
|---|
| |