Gene PHATRDRAFT_50497 details

Gene Information

• Locus tag: PHATRDRAFT_50497
• ID: 7199331
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011698
• Strand: +
• Start bp: 219236
• End bp: 223093
• Gene Length: 3858 bp
• Protein Length: 1165 aa
• GC content: 48%
• Product: predicted protein
• Protein accession: XP_002185401
• Protein GI: 219130498

Plasmid Coverage information

• Num covering plasmid clones: 21
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGCTCTT TGGTCTTTGG CAGTCCAGAG GGAAGGACCA CTGAATTGAA AAGACAACTC 
CATTGGGACG AGTCGTCCAC GGATATTTAT TCCGCCGCGT TTCCTCCTGA GGCAAGTAAG 
TCTCATCCTA AATCAAGTGA ACATTCAAAA AAGGATGGCT GGGACCTCGA GAATCTGGCA 
CCAAATATCA TCTTTCGGAT TCGCTTGTTT CGGTTGGTAG TGGTGTCCAC CTTGCTCATA 
GCAGGTGTGA TATGCTCGAC TCTCACATAT AACTTTCTCC GTCAGGAGGA GCAAGACAAC 
TTCGCCAATA CCGTAAGTAA ACGAAATGAA ATATATGCTT CTTACGAGCA CGCCGTCCGT 
CGTTTTTCAT CAGATCTTCG TTTCCTCTGC AGTACTTCTC CTTTTGCGAT CATATGCAAG 
ACACTACTCG TTTTCGTGTT CAGAACACTA TCCAGGCTTC TCGTGGCCTG TCGGAAACCT 
TGACTGCCTA TGCAAAGTCT TCCAAATCGA CCTTTCCGTT TGTGACTATG CCTATGTTTG 
AGGTCGCTGG TAAAAATGCC AGACATCTAT CGGGTATCGA TGTTTTTGGC TTTCTACCGT 
TTGTCGATGA AGATCAGAAA AATTCTTGGG AAGTATATGC TCTCGAAAAA TCCAGTTGGC 
TAGACGAGAG TAGAGTAAGT CAGCCTCTAG TGCTTTAGCC GGCCGGAATA AATGAGTTGC 
GGAGCTCATA TGCATTGTTT ATTTGTTGTG ATTAGGATCT TTACAACAAC GAAAGTGGGA 
ATGAAACTTC CGGATTCACA GAAGCTCCAT TCCCTCTGAC AATAACCCAA TTTACATCCG 
ACTTCGGAAC ATTGAAACCG GCTGTGCTCG GGCAAAAGGT GAGACTTGTA TTCAACTTCT 
GTGCAGATTT TTTTCAATCT TTACTGATTT TTGCTCCTTT GAGTGTAGCT TTACACTCCA 
GTCCATCAAG TTACTCCGCC GCCTTTGTCG AATAGTTTGC AGAATTTAGA TTTTATCACC 
CTTCCGTCCT TTGCTCGATC GCTCGAAGCT ATTACAGCTT TAAAAGGTAA GCAGGTGAAA 
AATAATGGTC TAAACCGCCG AAGCATCTTT GTACTGATAA TTGACAATAC TTCTTTTTTT 
TCAGATGTAG TTTTCTCTGA TTACGAAGAT GTGGACCTTC TTGCTAGGAT GGCATACCCT 
CCGGACGCTC AAGACACACT TGCTGGAGGC AGAGGGAGTG TTGACTACGA TGCAAGTCCT 
CGTGTATATA TGCATACTCC AGTTTACTCA CAGCTTAGTA CAGATCACGA AGAGATCGTT 
GGAGTATTGA GTGCGCCATT TGCTTTCGAT CTCTACCTCC AGGATCTACT TCCCAAAGAC 
ATAAAAGGAA TACACGTTAT TCTCGAAAGC AGTTGTAACA AGTGGGCTAC CTTTGAGCTG 
ATTGGGGAAC GAGCAGTCTA CTTAGGGCTT GGAGACAGGC ATGACCCTCA GTACGATCAC 
ATGGAGGTTG CTGTAGAGTT CACCGGCTAC GGAGGTATAA AAACTGAGAA TATTCCTGGG 
CAATGTGTGT ATACTTTGCG CTTCTATCCT ACTCGATACT TCGAGATCAC CTTTGATCGA 
AACACCAAGA TTATCGCTCC TGCTGTCGCG GCAGCCACAT TCTTTTGGCT GACCCTGGTT 
TTCTTTCTGT ATGATCGGTA TGTCCAACAA CGCACCGTCA AGGCTATTGA CACTGCGGCT 
CGGTCAGGGG CTGCAGTAGC TTCGCGATAC CCGTCTAGGA TTCTTACCCG CCTTTTCGAA 
GAAGCCAGCG ATCGAAAGGG CTGTCATGCT TCTCAAAGTA CCAGTTTAAA TCACAAACCC 
ACTCTAGACT GGACCGATGG CTGCAGCATT GACCACCCTT GTACTTTACC TTTCAAAACA 
AAGCCAATCG CAGAATTCTT CCCCACCTCT ACAGTAATGT TTGCGGATAT TGTTGGTTTC 
ACCGTATGGA GCTCAGGCAG GAAACCAGAG GATGTTTTTA CGGTATTGGA GACTCTGTAT 
CACGCGTTTG ATAAGATATC CAAGAATCGT GGGGTATTGA AGGTTGAAAC TGTGGGGGAC 
TGTTATGTTG CTGTGAGCGG CTTGACTAAC CAGCAAGAAA ATCACGCGGT GATTATGAGT 
CGCCTCGCGC GTGAGTGCAT GCATACAGCT CACGCTCTGA CGAAGCAATT GTCTTCAACC 
CTGGGGTCCG ACACTGCCGA ACTTTCGCTA CGGATTGGTA TACACAGCGG ACCGGTGACG 
GCGGGTGTCC TGCGCTGTGA GCGGTCTCCT TTCCAACTCT TCGGTGATAC CATTAATGTG 
GCATCAAGAA TGGAACGAAG TGGTCGAAGC GGAAGAATTC AGATATCGGA AGAAACTGCT 
GACAAATTGA CTCAAGCCGG AAAGACCGAC TGGATCATTC CGAGGGAAGA CGCACTCTTG 
ATCGATGGCA AGGGCGAGCT CAAAACTTAT TGGCTTTTCC TTGGAAATGA TGATCAACAA 
TGGTGCGGCA GCTCTTCGAA TTTGACAAGA TCGGTCTCGT ACACCACGCG AGATGAAGAT 
ACTGGTGACA GTGTCTATGA TGACCTCTTT GGTACCAGTG TTGGAGGCGC TTCTGAGTCC 
TTGAGCAAAG TCGGTAGCCT GACCAGCGAT AAGATGACCC GTCTCATCAG TTGGAATGTC 
GACGTTCTTA CGCTTTTGTT AAAAGAAATA GCGGCTAGCC GTCGTCCAGA TCCCGAGCCT 
GGAAGAAGCA CTGCAAGCAG CCGTCCGCCC CTTCCGGTTC GGACACAAAC TAAAGCTAGT 
CCAGCGGCGG CTGTCCCCGG TCGTGTTCTG GATGAAGTGA AGGAGATTCT TTCCTTTCCG 
CTCTCTGATG CCGCGAGTTC TGAGAAAAAG TTTAAGGAAG GAGACGTAGA GCTTGAGGAA 
ACCGTTCTCT CGCAGTTGCG CGTCTACGTT ACCAACATTG CTGCCATGTA CCGCAACCAT 
CACTTTCACA ATTTTGCGCA CGCCTCGCAT GTTGTCTTGT GCATGACCAA GATGCTTTCG 
AACATCGTAG CGCCCGGTGA TGCGGTGAAT GGAGCAAAAC ATCCTCAGCA AATCTCGCAG 
CACGATCATA CGTTTGGTAT CACATCCGAT CCTCTGACGC GGTTTGCTTG CGTTTTCTCG 
GCACTCATCC ACGATGTGGA CCACTGCGGT GTACCGAATA CGCAGTTGGT CCAAGAGAAG 
GCCCGTATCG CTTCTTTTTA CCGGAATAAG TCTGTCGCGG AACAAAACTC TGTTGATTTG 
GCCTGGGAAT TGATGCTGGA CGAGAATTTT GCCGAGTTGC GGGCGGCGAT TTGTATGACT 
CGTGGGGAGC AGACCCGCTT CCGTCAATTG GTAGTAAACG CCGTTATGGC AACCGACGTG 
ATGGACCCAG ATTTTAAGCT ACTCCGCAAC GCCCGTTGGG AACGCGCTTT TTGGGAAAGC 
CGAGCGGATG CCACCAGTCG GGAGACGATA AATCGCAAGG CCACGCTGGT TCTCGAGTAC 
TTGATGCAGG CGGCGGATGT GGCGCACACC ATGCAGCATT GGCACGTGTA TCGCCAATGG 
AGCGAGCGCT TCTTTCAGGA ATGCTACACG GCTTTCCAGG ATGGCCGTGC GGAACACAAC 
CCTGCCGAAA TTTGGTACTA TGGCGAGTTG GATTTTTTTG ACTTTTACAT CATTCCGTTG 
GCCAAAAAGC TAAAGGTTTG CGGAGTGTTT GGTGGTTCTG GAGGCGAATA CTTGAACTAC 
GCGCTGAAGA ACCGGAAGAA TTGGGAGAGG ACCGGTCGGG AAGTGGTCCA GGAAATGGTG 
AGGTTGGCTT CTGCTTGA 

 

Protein sequence

MGSLVFGSPE GRTTELKRQL HWDESSTDIY SAAFPPEASK SHPKSSEHSK KDGWDLENLA 
PNIIFRIRLF RLVVVSTLLI AGVICSTLTY NFLRQEEQDN FANTNTIQAS RGLSETLTAY 
AKSSKSTFPF VTMPMFEVAG KNARHLSGID VFGFLPFVDE DQKNSWEVYA LEKSSWLDES 
RDLYNNESGN ETSGFTEAPF PLTITQFTSD FGTLKPAVLG QKLYTPVHQV TPPPLSNSLQ 
NLDFITLPSF ARSLEAITAL KDVVFSDYED VDLLARMAYP PDAQDTLAGG RGSVDYDASP 
RVYMHTPVYS QLSTDHEEIV GVLSAPFAFD LYLQDLLPKD IKGIHVILES SCNKWATFEL 
IGERAVYLGL GDRHDPQYDH MEVAVEFTGY GGIKTENIPG QCVYTLRFYP TRYFEITFDR 
NTKIIAPAVA AATFFWLTLV FFLYDRYVQQ RTVKAIDTAA RSGAAVASRY PSRILTRLFE 
EASDRKGCHA SQSTSLNHKP TLDWTDGCSI DHPCTLPFKT KPIAEFFPTS TVMFADIVGF 
TVWSSGRKPE DVFTVLETLY HAFDKISKNR GVLKVETVGD CYVAVSGLTN QQENHAVIMS 
RLARECMHTA HALTKQLSST LGSDTAELSL RIGIHSGPVT AGVLRCERSP FQLFGDTINV 
ASRMERSGRS GRIQISEETA DKLTQAGKTD WIIPREDALL IDGKGELKTY WLFLGNDDQQ 
WCGSSSNLTR SVSYTTRDED TGDSVYDDLF GTSVGGASES LSKVGSLTSD KMTRLISWNV 
DVLTLLLKEI AASRRPDPEP GRSTASSRPP LPVRTQTKAS PAAAVPGRVL DEVKEILSFP 
LSDAASSEKK FKEGDVELEE TVLSQLRVYV TNIAAMYRNH HFHNFAHASH VVLCMTKMLS 
NIVAPGDAVN GAKHPQQISQ HDHTFGITSD PLTRFACVFS ALIHDVDHCG VPNTQLVQEK 
ARIASFYRNK SVAEQNSVDL AWELMLDENF AELRAAICMT RGEQTRFRQL VVNAVMATDV 
MDPDFKLLRN ARWERAFWES RADATSRETI NRKATLVLEY LMQAADVAHT MQHWHVYRQW 
SERFFQECYT AFQDGRAEHN PAEIWYYGEL DFFDFYIIPL AKKLKVCGVF GGSGGEYLNY 
ALKNRKNWER TGREVVQEMV RLASA