Gene PHATRDRAFT_41388 details

Gene Information

• Locus tag: PHATRDRAFT_41388
• ID: 7199299
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011698
• Strand: +
• Start bp: 16152
• End bp: 19796
• Gene Length: 3645 bp
• Protein Length: 1032 aa
• GC content: 50%
• Product: predicted protein
• Protein accession: XP_002185365
• Protein GI: 219130423

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.000381991
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTGATG CTGATGCTCC CAACGCTCCC GAAGCTGGTC TTGCTCCGGC TGTTGCTGCC 
AATGCCCCGG GTATTGTTGG TGACGCCCAA GCTGCCGCTT ACGCTGCGTT TGCCGCTGCT 
GAAGCTCAAA TGGCAAACGC TCTCGCTGTT CTCGCGGGGG AAGCACCCCC TGATGCTCAA 
CCCTTTCCTC CACCTCCGGG AGTGGCCGAC ATTCCAGTTG GCCTCCCTCC GGCTGTGGTG 
GATGCTCCTC TCATTGATCC GTATGACAGT CTTCTCATGA GGGCTGGCAT GAACTACGGA 
ACTCGCAAGG CTTTTTCTAA GGAGGGCTAT GGTTTGATGT CTGACTTGGT TACTCTTAAC 
CAGAAGCAAC TTGAATCCCT CATTGATATG ATGAACAAGA AGCATTGCGG TAAATCTTTT 
CAAGGCGCAA TTCCGTTGGG CCTGAACCTT GTGGCTGAAG ACCTTGAGAT TGATATTGGC 
CACAAAACCA AGACCACTCT CAAGGTTATT CTCCATTGGG CGGACCTCCA GAAAAGTCTT 
GGATTAGACG TGAATGCCGA GGATTATACC AATGTTGTTG GTCAGCTTGC CCGCGAACGT 
ATGGATGAAG AGGAGAAGAT TCTTGAGGCG GCCAAGAAGC TTACGCCTTC TAAGCCAACA 
ACCCTCAAGG ATATGACCAA GTGGCGTTCC TTCTTTGAAA ACTGGAACTC ATACATGAGT 
CAGTGTCGCG GTGCTGCGGC TATCCCTCTT TCGTACATTT ACCGTACCAA CAAGCAGCCC 
AAGACCGCTT TGGTCGGAAC CTATGTGAAT ATGGATGCCT ATTTGGTTGC CCAGACAGTC 
CTGTCTGGTT CCAACTTTGA GATCAATAAC CAACGGGTTT TTGACAAATT CAAGGAAGCA 
ATCATTACAA CCGGACCTGG ATGGTCTTTC ATCAAGATGT ACAACCAAAG CAAGGATGGT 
TGTGCTGCCA TTTTGAAATT AAAGGAACAG GCGGAAGGAA CATTAAACGA GTCAGTTCGC 
CGTGATGATG CCATCAAGAT CCTGTCAACT ACAACATACA ATGGTCCGAG TTGTAACTCG 
AATATTGATA TGCTGTTGCA GAAATTTCAG TATGCCATAT CGGAATTGGT CGAAATTGAC 
GGAGTTGCGT TGCCGGATGG GCAGCTTGTG ACTTATTTGG TCCAGGCATT GAAGGACCCA 
AGTCTGAGTT ATGTTCGTGA CACAATTCGC ACCAATGCCA CTTATCGGAA CAGTTTTCCG 
GAAGCGCAGC TTTTTGTGAA GACTTTTGTG TCTTTGTCCA CAAGCAAATC CGAAAACACG 
CCTCGACAGG TCAATGATGT GCAAACATCA GGTAGTGGGG CCTCCGGTGG GAGTAAGAAA 
GGAGGTACCG GGAAAGGAGC CAGCAAGCCG ACTCCCTTCA AGGGTGCAGT CACGGCTCGC 
AGTTATACTC CGGGAGAATG GAAAAGTTTG TCCAAGGACC AACAGGAAAA AGTGCGATCG 
CTGCGTAATA AAAAGAAGCA AGGAGGGAAA CCCGAGGAAT CAGAGAGGAG TGTTGACAGT 
GTAGCACGGG GTGAGCCTGT GGACACTAAG GAAGTCCATA CCAGCAGTGA AATGGAACCG 
ACTTCAGATG CGGCTGGCCT GCAATTTGGC CGTGGTGCGT ATAAGAAATC GGTCGGATTC 
ACTGCGGACA CCGCTTCTCC TTCTGAAAAC GGAACGAAGA AGCAGAAAAC GCATCATGAT 
GCGTGAAACG CGGCACCCGA TGCCAGTGTT TCGGGGACTA AGCAATGCAT TTTACCAGAT 
CGAGTGATAT TGAGCCTCAC CTCTACACGC AGCATTTGTG ATCTCAACGC ATGCACTCAT 
CTTGGTGAGG GCCGCTGCAA GTTGGATTCA CATGCAGACA CATGCGTGGC TGGGGCAAAC 
ACTGTCTTGA TTGGTGAATC GCAGAAGTCC GTAACTATGC GGCCTTTCTC TGGTGAATAT 
TCTGCGCTGA AGAATATCCC CATTGGAACG GTTGCCACAG CTTACACAGT ACCAGAAGAC 
GGGAGAGTGG TGCTTCTTAT TATTAATCAG GCCCTATTCT TTGGGGACAG ATTGAAAAAC 
ACCCTATTGA CCCCCAACCA GATGCGAGAC TTTGGCATTG AAGTTGACAA TGCCCCTCGG 
CAGTATGTCG CCAACTCCAA GCACTCTTTG TATGTTCCTG ACTCTCCACT TTGGATTCTG 
CTGCAACTGC GCGGAATATT CTCGTTTTTG GAGTCGCGGA AGCCCACGCA ACAGGAACTC 
GACGAGTGTG AGCATATCAT ACTCACCTCT GATGTGCCGT GGGAGCCTTG CTCCACTGAC 
TTTGCACGTC GGGAAGAACA GGCCGTTAAG CGTGACCGGA GTGTATCATT GGTTGACACA 
AGGGGACTTT CCACTGGCCA TGCAACCTTC TCAGCACACC AATATGGTAT CCGTACTATT 
GCGGCCTTGC AGAGAGTACT TGAGACTTTT CGTTCCTTGA CAGAGGTTGA ATTGTGCGAG 
ACAATCTAAC GGACCGCCTT ATTGCCTGTG TTAATGTTGC GTCGGATGAC TACTGTGGAG 
ATGGGTTGGA TGGCAGGGCT GACTTGGATG TGTACCCATT CCGACAACTT CACCAGTGTT 
GTCTCAAATA TGACATCAAG CGAAAGATGG TCAGCGTTGA CGCTTGAGGT TTTGTCGAGG 
CGTTGGAATA TTGGCCTGGA ATCGGCCAAG CGGACTCTAC AAGCGATGAC GCAGAAAGGT 
GTGCGGACTG TGATGCACCC CTTGACCCGA CGGTATCGTA CTCGCCAATC GCATTTACGA 
TTTCCTACCA TTTGGACCAA GGTTTACACC GACACCATGT TTTTGTCTGT GGTCTCCATC 
CGCCAGTACA AGTGTGCCCA GGTGTTTACA ACAAACACGG CCTATTTGCG CATTTACCCT 
CTGCAAACCA AGGAGCAAGC TCCTGATGCA CTAGATACAT GACATTGGGG TAATGAGTGA 
TCTAGTTTAT GACGGATCTA AAGAGCAGGG AGGTGGCAAA CATTGGAGAG AGATTGAGCA 
GCGTCACCAC ATACATTGCC ATGTAACGGA GCCACACAGC CAGTGGCAGA ATCGATTCGT 
GAAATTAAGA AGGCTGTTCG GCACCGACTG CAGGTCTCTC GGGCACCAAG GCGACTTTGG 
TGTTTTTGTT GTGAATGGGT TTCGGCAATC CGTCAACTGA CCGCCCACAA CATTCCTGCA 
TTAAACGGTT GTGTTGCTAC AGAGCTTTTG GAAGGGGACA CCCCTGATAT TTCTGAATAT 
GCGCAATTTG ACTGGTATGA GCCTGTCTGG TTCATTGACC CAACTTCTGC TTTCCCTGAA 
ATGAAGAAGA AATTGGGCCA ATGGGTCGGA GTTGCATCAG ATGTGGGACA GGCAATGACT 
TTTTGGATCC TTCCAAAGTC ATGCATCCCA ATGGCACGGT CCTCTGTTGC TCGCGTCCTC 
CCAGACGTAG GCGCTACTGA TGAATTTAAG GCTGACCTTG CTGAACTCAA TCTAGCCATT 
GAAAAGAGAA TTGGAAACAG CAAAACTGCA GAAGAAGATC AGGTCATTGA CGGTCAACTC 
GCAAATCTAG TTTCGGGTCC GACTGATGAT CTGTTTGAAG GGTAA 

 

Protein sequence

MADADAPNAP EAGLAPAVAA NAPGIVGDAQ AAAYAAFAAA EAQMANALAV LAGEAPPDAQ 
PFPPPPGVAD IPVGLPPAVV DAPLIDPYDS LLMRAGMNYG TRKAFSKEGY GLMSDLVTLN 
QKQLESLIDM MNKKHCGKSF QGAIPLGLNL VAEDLEIDIG HKTKTTLKVI LHWADLQKSL 
GLDVNAEDYT NVVGQLARER MDEEEKILEA AKKLTPSKPT TLKDMTKWRS FFENWNSYMS 
QCRGAAAIPL SYIYRTNKQP KTALVGTYVN MDAYLVAQTV LSGSNFEINN QRVFDKFKEA 
IITTGPGWSF IKMYNQSKDG CAAILKLKEQ AEGTLNESVR RDDAIKILST TTYNGPSCNS 
NIDMLLQKFQ YAISELVEID GVALPDGQLV TYLVQALKDP SLSYVRDTIR TNATYRNSFP 
EAQLFVKTFV SLSTSKSENT PRQVNDVQTS GSGASGGSKK GGTGKGASKP TPFKGAVTAR 
SYTPGEWKSL SKDQQEKVRS LRNKKKQGGK PEESERSVDS VARGEPVDTK EVHTSSEMEP 
TSDAAGLQFG RDTCVAGANT VLIGESQKSV TMRPFSGEYS ALKNIPIGTV ATAYTVPEDG 
RVVLLIINQA LFFGDRLKNT LLTPNQMRDF GIEVDNAPRQ YVANSKHSLY VPDSPLWILL 
QLRGIFSFLE SRKPTQQELD ECEHIILTSD VPWEPCSTDF ARREEQAVKR DRSVSLVDTR 
GLSTGHATFS AHQYGIRTIA ALQRMGWMAG LTWMCTHSDN FTSVVSNMTS SERWSALTLE 
VLSRRWNIGL ESAKRTLQAM TQKGVRTVMH PLTRRYRTRQ SHLRFPTIWT KVYTDTMFLS 
VVSIRQYKCA QPVAESIREI KKAVRHRLQV SRAPRRLWCF CCEWVSAIRQ LTAHNIPALN 
GCVATELLEG DTPDISEYAQ FDWYEPVWFI DPTSAFPEMK KKLGQWVGVA SDVGQAMTFW 
ILPKSCIPMA RSSVARVLPD VGATDEFKAD LAELNLAIEK RIGNSKTAEE DQVIDGQLAN 
LVSGPTDDLF EG