| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_50356 |
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| Symbol | SQD2 |
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| ID | 7199140 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
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| Kingdom | Eukaryota |
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| Replicon accession | NC_011697 |
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| Strand | + |
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| Start bp | 64244 |
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| End bp | 65924 |
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| Gene Length | 1681 bp |
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| Protein Length | 507 aa |
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| Translation table | |
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| GC content | 51% |
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| IMG OID | |
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| Product | glycosyl transferase, group 1 |
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| Protein accession | XP_002185276 |
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| Protein GI | 219130238 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TGCTCCTGTC TCACTTACAG CATTTTGGTG GTGAGTTTGG TGAACCAGTC ACAGCCCAGC
ACCGTCATTT GTCACACAGT TTGACAATTC ATTGCCATAC CACACCACAG CGCTCCCTCC
TAGTGGAGCT TTTCATCTTT GCTTCCAAGG ACAGGCAATG ATCGTTGTAA AATCGGCGCT
CCTGATTGTC TGTTTGGTGG CTACAGCATG CATTGGGTTC GTCTCATGCT TTCAGCCATA
CACATCCGCA ATCCCTCCGC CTTGTACTTC CTCTGTCAGC TCATCTTCGG TCCGGCTAGA
AGCCGCCGCG AGGTCATCGG ATGCGCCACC GCTACGACGC AACCCTCCCC GTAAGATTTG
TCTCATGGTG GAACCTACTC CGTTCACTCA TGTTTCTGGA TACGCGAATC GTTTCAAAGA
AATGCTCAAA TTCATGGCCA AAGCCGGCGA CGAAGTTGAC ATTCTGACCG TCGACACCAA
GACTCCCGCA CACGAACTGC CCACCGCATG CAGTGGATTC TCCATCAAGC ACACACAGGG
CTTTACCTTT CCCCTTTACA ATCAGATTTC CCTCACCTTT GATTTGCCAG AAATGAAAGG
CGCCCAAATG CTGGAAAAAT TCAAACCCGA CCTCATTCAC GTCACATCTC CCGGCTTCAT
GCTGTTCGCG TCTATTTTCT ATGCGCGTGT CTTATGTATT CCTCTAGTTA TGAGCTATCA
CACACACTTG CCGAGTTACG GCAAAAATTA TCTTTCCTTC GTACCTGGTA TTGAGAACTT
TTGTTGGGAA TTACTGCGCT GGGCACACGC CCGAGCGGAT TTGACCCTGG TCACAAGTCC
GCAAATGCAG GAAGAACTGA CTCGCAACGG GATTCCTCGA GTGGACGTCT GGCGGAAAGG
CATCGATACG GATCGATTTG ATCCCAAATT TCGGTCCACT TCCATGCGGG AGAAAATGAC
TAGGGGCAAT GCTGACGACT TTTTGATGGT CTATGTGGGA CGGCTAGGAG CCGAAAAGCG
TCTGAAAGAC ATCAAGCCCA TGCTGGAACG AATGCCCAAC GCGAGATTAT GCATAGTTGG
TAAGGGACCA CAAGAAGAGG AACTTCATGA CTATTTCAAG GGTACCAACA CGGTGTTTAC
TGGTCAATTG GATGGCGATG AGCTATCGTC CGCCTTTGCG TCGGCTGATG TGTTTGTCAT
GCCTAGTGAT TCCGAAACCT TGGGTTTTGT CGTTTTGGAG AGTATGGCGT CCGGTGTTCC
CGTAGTTGGG GCCGCCGCAG GCGGCATTCC CGATATTATT GATGACGGTA AGACGGGATT
TTTAGTTCCA CCCGGAGATA TTGCTGGCTT CGTATCGCGC CTCGAGAGTC TAAGGAATGC
GAAATTCCGC ACTCAAATGG CCAAGGCAGC CCGGAAAGAA ACTGAACGGT GGGGGTGGGA
GGCCGCTACC TCGTACTTGC GAAACGTTCA ATACGAAAAG GCTCTTATCA ACTTTCATTC
CCGAGCGTTT GGGGGATTCG GGCGTCCACG ATCCGGTACT ATGTGGAGAT TGCTTGGCTG
GCGGATGCGC CGGGTGATAC ACAAGGTTGC CAAGCCTAAG GCCGTCTTTT CGTCCATTTG
GAGAAAGCTA TCGTTCGGAC GCCAAGAAAA TAGCAACAGT GGCAAGCCAG CGGCGGCATG
A
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| Protein sequence | MIVVKSALLI VCLVATACIG FVSCFQPYTS AIPPPCTSSV SSSSVRLEAA ARSSDAPPLR
RNPPRKICLM VEPTPFTHVS GYANRFKEML KFMAKAGDEV DILTVDTKTP AHELPTACSG
FSIKHTQGFT FPLYNQISLT FDLPEMKGAQ MLEKFKPDLI HVTSPGFMLF ASIFYARVLC
IPLVMSYHTH LPSYGKNYLS FVPGIENFCW ELLRWAHARA DLTLVTSPQM QEELTRNGIP
RVDVWRKGID TDRFDPKFRS TSMREKMTRG NADDFLMVYV GRLGAEKRLK DIKPMLERMP
NARLCIVGKG PQEEELHDYF KGTNTVFTGQ LDGDELSSAF ASADVFVMPS DSETLGFVVL
ESMASGVPVV GAAAGGIPDI IDDGKTGFLV PPGDIAGFVS RLESLRNAKF RTQMAKAARK
ETERWGWEAA TSYLRNVQYE KALINFHSRA FGGFGRPRSG TMWRLLGWRM RRVIHKVAKP
KAVFSSIWRK LSFGRQENSN SGKPAAA
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