Gene PHATRDRAFT_52685 details

Gene Information

• Locus tag: PHATRDRAFT_52685
• ID: 7199091
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011696
• Strand: -
• Start bp: 56826
• End bp: 58952
• Gene Length: 2127 bp
• Protein Length: 708 aa
• GC content: 47%
• Product: beta-glucan elicitor receptor
• Protein accession: XP_002185196
• Protein GI: 219130068

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.370371
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGGAGC GACAAGAAAC CAATGAGCGG CCCTATAAAC GATCGAGATC AGTCGCTTCC 
TCGACTGAAG AAATTTGCCT TTTGAACCAA ACAGGTATCC GCAACATGCT CAGTGGACGA 
GAAGATGAAG CTGAACGCTA CTTTTCGCAA GCACTAGGCC AGGTGGATGG AAGAAAACCC 
TGTGCGTCTC TCGATTCCGC GACCAGAGCC TCCTCAAAAC AAATGAAACC TCCCTCTTCC 
GACATTGAAA TTCAGCCTTC ATCTACATCA GAAATAGACG GTACTGCAAG TAGTAACGAC 
ACCTCAAAGA CGACCATGCT GTACATATAT CAACGCCAAG AATACGACGA GGGCATGTAC 
GTTTATTCCG AGGCGTTACC ACTCGATGAG TCGCTTACCG AGTCTGTTCG CTCCGGAACG 
CTCCTTTACA ATGTTGGGCA AACGCACGTT CGTAGAGGAA AATATTTCGA AGCGCGTCGT 
TGGTTTGAGC TTGCGCTGGT AAGAGTCACT TTGGTATCTC ATGACCTTAA AGCTGTTCCA 
ATATCGGTCA AGATTCAGCA TAACTTAGGG CACTGCCACT ATCGTCTGGG TCGCAACGAG 
GAGGCTATGA CTTGTTACAA AAAGGCCTTG GCTATTATCA ACTCAGCTGG ACTTGGTGAT 
TTAAGCGCCG CGGCCACGAA CAACTGCATG GCAGTCCTTT TATTCCACGA CGAATACGCG 
GAAACGAAAG ATGCGCTCAA TATGTTCAAG GAGAGTCTAA AAATTTTTCG TTCCCAGCTT 
TGTAGCCAAT CCAGTGAAGT CGCCACGGTC TTGAACAATA TTGGTCGCGT GCATTATTTG 
GAGGGCAACT ATGACTGCGC GCTTGCTGTA TACAAAGAGG CTCTGTTAAT CCGACGCAAA 
GTACTTGGAG AGAAGTCAAT TGATCTAGCA GCGACAATGT GTAACACCGG ACAGACTTTG 
CATCAACGAG GTGATCTAGA CGAAGCAATG GTCTACTACA GTGAATTTCT TAAGTTAGCC 
GGATTTCATT TGGGATCGAA CCACCGCGAC GTCGCTATTA TCCTAAAGTG CATGGCGGAG 
ATCCATCACG GTCGTGGACA ACTTGATAAG GCACGTTCCA TGTATGAAGA AGCCCTCCGG 
ACCGGACGCA TCGCTCTCGG TAATCACCAT CCCGAATTGG CCTCGACGAT CAACAAACTG 
GGCAACTTGT ACTATGAAAT GCAAGATCTC GACACAGCAT TGCAATACTA CAATGAAGGA 
CTCAAGATCG AACAAATTTT ACTGGATCCA CATCATCCCC ACATTATGGT CACGTTAATG 
AATATTGCTC AGATTCATCG TCACCGTGGG CATTTCGCAG CTGCTTTGGT GAAGTACACT 
GAAGTGCACG AGCTGCAGAT GAAAGCGTAC GGCCCTAATA ATCTCGCCGT AGCCAGTACT 
TTATCCAGTA TGGGCTTGAT GCAATATCAA TTGAAATCAT ACAGCTCGGC GTTTGATTTA 
TATCAGGAAG CGCTTCGAAT CCAACGAGAC CACTACGAAT CAGACGAAAA TGCTGATGTG 
GCATCAACGC TCAACTCCAT AGGGCTCGTT CTTTTCAATC AAGGCGTATA CGGATTGGCC 
AAAAACTGCT TTACAGACAG CCTCAGAATT CGCCGGAATA TTCTTGGACC CGATCATCGT 
GACGTTGCAA TCTTGTGGTA CAATATTGCG ACTATCTACC TCGAAACTGG CGAAGACGAT 
TTTGCGATAA GACTATACAA AGAAACCCTT CGCGTGGAGC GTCATTCACT GGGTGAAAAA 
CACCACGACG TTATTCTGAC TTTGCAGCAT TTGGGTTTAG TTTACCAACA ACGCGGTGAA 
TTGGACGAAG CGCTGCATTA TTTTAGCGAG GCTCTGGAAA TTGAGCGAAC TAAAGAGGGC 
AAGAGCTATG TTGCCGTTGG CAAGCTTCTG AACTTAATTG GAAACATCCA TCTGCAACGG 
GCAAATGTTG GGAATATGAT GGAATGCTAT GTTGAGGCTT CGAGACTCTA CCGAGAGTGG 
ACTCAGCAGA ACGACACTCT CGTAATAGCT GGATACAACT TTTACGGCCT CAGCAAACTC 
CACCCTCCTT CTGCGTCTAT GGCCTAG 

 

Protein sequence

MTERQETNER PYKRSRSVAS STEEICLLNQ TGIRNMLSGR EDEAERYFSQ ALGQVDGRKP 
CASLDSATRA SSKQMKPPSS DIEIQPSSTS EIDGTASSND TSKTTMLYIY QRQEYDEGMY 
VYSEALPLDE SLTESVRSGT LLYNVGQTHV RRGKYFEARR WFELALVRVT LVSHDLKAVP 
ISVKIQHNLG HCHYRLGRNE EAMTCYKKAL AIINSAGLGD LSAAATNNCM AVLLFHDEYA 
ETKDALNMFK ESLKIFRSQL CSQSSEVATV LNNIGRVHYL EGNYDCALAV YKEALLIRRK 
VLGEKSIDLA ATMCNTGQTL HQRGDLDEAM VYYSEFLKLA GFHLGSNHRD VAIILKCMAE 
IHHGRGQLDK ARSMYEEALR TGRIALGNHH PELASTINKL GNLYYEMQDL DTALQYYNEG 
LKIEQILLDP HHPHIMVTLM NIAQIHRHRG HFAAALVKYT EVHELQMKAY GPNNLAVAST 
LSSMGLMQYQ LKSYSSAFDL YQEALRIQRD HYESDENADV ASTLNSIGLV LFNQGVYGLA 
KNCFTDSLRI RRNILGPDHR DVAILWYNIA TIYLETGEDD FAIRLYKETL RVERHSLGEK 
HHDVILTLQH LGLVYQQRGE LDEALHYFSE ALEIERTKEG KSYVAVGKLL NLIGNIHLQR 
ANVGNMMECY VEASRLYREW TQQNDTLVIA GYNFYGLSKL HPPSASMA