| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_50241 |
|---|
| Symbol | |
|---|
| ID | 7199096 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011696 |
|---|
| Strand | - |
|---|
| Start bp | 78426 |
|---|
| End bp | 81138 |
|---|
| Gene Length | 2713 bp |
|---|
| Protein Length | 899 aa |
|---|
| Translation table | |
|---|
| GC content | 48% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002185201 |
|---|
| Protein GI | 219130079 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACTCTT CGACGATGGC CCACGCATCT AATTTTGCGA TCGCTGAAGA CCAGACCTCA
TGTCAACGAT CTTATCCTAC AACTCCGGCT TTTCAGACTC ATTCTGATTC ATCCGATACT
TTTGCAGCGG AACTTTTGAT TCGACCAAAC GCTGTGACAC CGACAATTAG TAGGTCATTT
CTTTGGATCT TAGGATACAC GCTACGGACG CTCTTCTGCG ATATTCCTTT GCTTGTGGTG
TTATTGACGT ACTTTTCTCT CAACTGGATT CATCATGTTC ACGATAATTA TTTGTACCCT
CAGATGCAGG CCCTGGTTTG GGATGAAGAA CGCGCAACGC AGGACATCAC GTATTATACA
CGTTTCTGCG ATGCCGACGA CATGACGACC AAGAATGGAG CAGACCTATT CTTGCCTCGA
GACGCCTCGC CCAAGGAAGC GTATGAGCAT CAGCTTTTGC ACGGGTTCAC TATTTTCAAG
TCGGTCCTGA CGACCCCGAC TGCTCGAGAT CTGCGTTCTT TCGTCTCCTC CCGCAATCGC
AATTTGACCA GTATGGAGAG TATCTTTGTA ATTGAAGGCA ACAACAGATT TTCGTTTGGA
CTCGGGACAG AGGAACCTTC TGTGGCGAAA GCGATGAAAG AGCTTGCTAA TCACGACCAA
CTACGGCGTT CATTGGAAAA GATTATCGGA CCTAATCCTG CCTTGATTGA AATGACTGCG
ATTACATCTT CGTATGGAGC GGTCGCTCAG TGGTGGCACG ACGATGTCAT TCCAACGGCT
TCTGCAGTAA AATATGCACG GACATTTGCC CCTAGCTACT CTGTGTTCGT CCAGCTGCAA
AATACGACCA AGCAAATGGG TGCAACTTCG GCTTGTCCTG GTAGCCACTA TTGCGGAGCT
GGCCGTATGG ATCTTTTTTG TGACGAAGAG GGTTTCCAGG TTGTTGGTGA CGACGGGTAT
TGGGGGATTG GCGATGCCCT TCTCATGAAC ATGAACTCGT ATCATCGCGG TGCTGCTCAT
ACTGATCCCG AGGGAGAGGA CCGCGTCATG CTAATTTTGA CGTTTGCCCC CAAACCTGAA
CCACGCGTAG AATCCAGGCA AATGTCGGAA GGCATCACTT TTTCTCTGCG CTGGGATATG
TGGGGACATA CCTTGTATGA TCTTGCCCGT GCCGATACTC GTATGACCCA GCCTTGGGCG
ACGCTTCGTG CCCTTGGTCT TTACAAACCT GATGAAAGTG ATTGGGGCAC CGATTATATC
TCGAGTACAT CTATGCGTCT CTTGAATGAT TACAATGGAT TCATACCGGA CGATTTGGCT
AGTTTTATAG AAGCTGGTGG CTTTCCTCTC CTCCCATCAT TTCTGCAAGC AGAATTCAAC
GAAGATCACG GTCCCCAAGA CGCGTGGTAC CACTTTATTT TGGAAACTTT TTTTATTTGT
AAAGAGTTCA TGAAGCGTGT CTCTATTGCA GCGATAGTAG GCTACGTTGC CTTTTTCTTG
CTCGTTGCAA GCTGGTCTGG CAAGAAAAAT CGCGCAGCGA AATTCTTTGA TGCGATTTTA
AGGCTGTTAC TAATACTCGG CGTCGTCTAT CTTGCTGAGA TACTTGCTCG CCGCCACGTG
GACGAATCAC TATGGGCCAT CGATATCAAG GCTAACCGTC GCTACTCCAG TGTTTTCACA
AATGAGCTAC ATTACGATGT TGTTGCGAAG GGATCTTCTA CTTTTCCGAC CCGGCACGAT
GTTTTGATTG AGAATCGATA TGGCTCGGAG TATCTTGCTA TGTATGATGA CTATATCAAT
GGTCACCCCG GTAATCGTGT ATTCGGAAAG GCTGTCAGAA AAGCTGCCCC GTATTTTTCT
TCCTATTCGG ATCTCTTTAA GAAAGCAACC ATAGGGTTTG TAGTTGAAAC GATCGAGATG
GAGCTTGGCC GTTTTCTCTT GCAAGGACCG AAGGGAAACT GGTATTTAAT GGAAAGAGAG
GAAGCTTTGG ACTACACAGC GAAAGAAATT GCAGCACTTT CCTCTCCAGG TACTAAAGCT
GTCAGGGATA GAATTCGTCT TTTGAAAGGA GACTGCCGAT TTGGGGTCTA TCGTGACACA
GCGATGTCGA AGTCCCATAA CTTTCCGTAC TTAAAATCGT TGGAGGATCT CGTTCTTGCA
TGTGGTCGTC GATTGGTCCA ACGCAACCCG CTTTTACCTT TGGGTGTCAA TGCAAACAGG
GAAAGAGTCT TCTTTGGGCA GACACGAATG TTACAGCCGC CGGTGACGAG GGCGCAATTC
AAGCGACGTG GCGTAGACCT TGGGATAGGC AGCAATCCTG AGCCTCCGTC AGAGCTTGCA
TGGCTCAAAT CCGGCGACTT TGTCGAAGGA GTGGTCGATG GGTACTGGTA TGTAGGCGAA
CTCAGTTTGA TTACAGCCCA CGGGTTATAC CACATAGACT ATCCGGATGG CGACAGCAAC
TACGTGGATG AATACGAGAT CAGATCAGTA CTTCCGCTGG ACGTGGGTGA GAAGGCGGAG
TACTTTCATA GCTCTGAGGG CATCTATGTC TCCTCTACTG TTACGGCTGT GCTAAATGAC
TTTCTGTATA ATATTATAAT CGACGAAACC GGGAAATCCG TCGAGGAAGC GGTAATCGAG
CATTTTCGTC GCCCGCTCCA AGTGGAAGTG GAGCGATACG AATATCAAGC CGCTTACTAA
TGGAAATGTA TTC
|
|---|
| Protein sequence | MDSSTMAHAS NFAIAEDQTS CQRSYPTTPA FQTHSDSSDT FAAELLIRPN AVTPTISRSF
LWILGYTLRT LFCDIPLLVV LLTYFSLNWI HHVHDNYLYP QMQALVWDEE RATQDITYYT
RFCDADDMTT KNGADLFLPR DASPKEAYEH QLLHGFTIFK SVLTTPTARD LRSFVSSRNR
NLTSMESIFV IEGNNRFSFG LGTEEPSVAK AMKELANHDQ LRRSLEKIIG PNPALIEMTA
ITSSYGAVAQ WWHDDVIPTA SAVKYARTFA PSYSVFVQLQ NTTKQMGATS ACPGSHYCGA
GRMDLFCDEE GFQVVGDDGY WGIGDALLMN MNSYHRGAAH TDPEGEDRVM LILTFAPKPE
PRVESRQMSE GITFSLRWDM WGHTLYDLAR ADTRMTQPWA TLRALGLYKP DESDWGTDYI
SSTSMRLLND YNGFIPDDLA SFIEAGGFPL LPSFLQAEFN EDHGPQDAWY HFILETFFIC
KEFMKRVSIA AIVGYVAFFL LVASWSGKKN RAAKFFDAIL RLLLILGVVY LAEILARRHV
DESLWAIDIK ANRRYSSVFT NELHYDVVAK GSSTFPTRHD VLIENRYGSE YLAMYDDYIN
GHPGNRVFGK AVRKAAPYFS SYSDLFKKAT IGFVVETIEM ELGRFLLQGP KGNWYLMERE
EALDYTAKEI AALSSPGTKA VRDRIRLLKG DCRFGVYRDT AMSKSHNFPY LKSLEDLVLA
CGRRLVQRNP LLPLGVNANR ERVFFGQTRM LQPPVTRAQF KRRGVDLGIG SNPEPPSELA
WLKSGDFVEG VVDGYWYVGE LSLITAHGLY HIDYPDGDSN YVDEYEIRSV LPLDVGEKAE
YFHSSEGIYV SSTVTAVLND FLYNIIIDET GKSVEEAVIE HFRRPLQVEV ERYEYQAAY
|
|---|
| |