Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_50108 |
Symbol | |
ID | 7198913 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011695 |
Strand | - |
Start bp | 60016 |
End bp | 61894 |
Gene Length | 1879 bp |
Protein Length | 425 aa |
Translation table | |
GC content | 49% |
IMG OID | |
Product | predicted protein |
Protein accession | XP_002185041 |
Protein GI | 219129743 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000277359 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | AACGGTTCAG TGGGAAAAGA TCCCATAGTA CCGCAGTTGG CAGGCCCGAA CGAACAACTC TACGATTATC GTGCCGCCTC TACACCAGCA GGAAGACTGT AGATGTCTCG CAGCCAAGCG ATCTGGCAGC TCTATCGGAC GACCGCCAGA TTGAAAACTT ACAGTTACAT ACCAACACAA TGGTTCTTCC ATCGAGATCC AAGACCATGC TGCTTCCCTT TGTCGTCAAG CGTTGCCACA AGCTCTTGAC ATTCCTGGTC TTTGCATCGG CAATATATTT CGCTTGGAGG ACCTGGCGGG CGGCGGCAAG ATTAGGATTG GCGGAAACTA CGTGGTTACA AAGTGCCTCT AGGGATGCGG ACTGGAACGT TTTCGGCTTG CCTCCCTCCG CACAGCAATG GAATTCGGCA CCTCCGCCTC AAGCATTGAC TCCCCCTCGT GAACGAAGAA ATAGATGTGC GATCAATCTG TACGGTCTTC CCCGATCGTT TGCGCCAATC GTCCTTCCTG CACTCAGGCG AAACGTCATT GAACCTAACG CAAAACATTG TTGCGACTAT TTTGTGCATT ATTATCAAGT CACGGAGGAA AAGGCGGGTC GCTCCGGTAA CGGAGGTACA ATTAATCCAG AAGCCATTCG ACTGCTCCGA CAAGCGGTGC ACGATGTTCA CAATGCTACC GGCAGTGGTG ACGTTCTTCC TAAGGTGGAG TTTCGTTTCG ACACCGATGA TGCCTTTTGG AATCAGTACC AACCCCTCAT CGATCGAATA CGCAATACAA AGGACGATGA AGGCCGGTAT TTGTACTTCC CTTGGCATTC TAAGGATTAC ATCTATCCTA CCGCTACCGA CAACATTATC AAAATGTGGC ATAGTGTCCA GGCGGCGTGG AATTTGATGA AAGCTCACGA AATAGTGCCG TACACCCGCG TAGCCATGCT GCGCTCGGAC GTCGTCTTTA TGACCCCTAT TGATGTGTAT ATGGTTAACG GAAAGACAGA TGCACGCAAC ACCAAAGCCA TCATTCCAGC TTTTGGGCGT CACCCAGTTA GTGATCGGTT TATTTGTGGC CCCGCCGCCG CCGTCGAAAT CTGGGCAAAC CAGCGATTCG CTAGAATGGA AAATCATGTC CAATTAATGC TGAAAGTCAA ACCCGGCTTT GGCATGCACT CGGAGCGATT TATGTACCAT ACCATTTTCC CCGCTATACG CGAAAAAGGC GTGCAGATAG TCGAAGACAA CAAGATGTGC TTCGTCCGTG CTCGGGCTGA CGAAACGGTC TGGATTGACG ATTGTGAAAA CCCACGGCGC GTCATCGCCG CAAAATCGAT TGTTGCCCGC ATGGGAGACA AAATGAGTCG ATTAGAGCAA GCACTGGGCC GTGCGTGCAC AACCTCAGCT GAGAAAATTC ACAATATGTG GGTTCAGGAT GTTGCGAATT GCTCGTCAAC AAAATAGCGC TTGTGGGAGA TCTGTCTCGA TGGATGTACG TTCGGTTTTG CGACTTTATT GAGCACTCAA GAATATCGAA AGAAGGTCTG GTCTGTCTGC TGTCTCACAG AGCTACATCC CAATACATGA GTACGCGTTG CTTACTGCAA AGCTAAACGG AGTCTATTGC CAAGCTTATG CTTGCGCGGA CTGTCTCCTA GACAAAGTAT ACAACCATAG TTGGGAGGGT GAGAATGGAA CAAAGCATAA ACATGATCAA ATACGAAGGG AACGACAACA TGTTTAAGGT CCTGAAAACT ACCTCATCAC TCAGTTTGTG GAGCAGTCCC ATTGGGAGCG AGAATTCTTA AAGGAAACAG AAAACCAAAT TCATTGTGCA CTGTCAGTCT CATAGAAAGT GAACTACTAG AGGAGCTGTC TAGTTCGAA
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Protein sequence | MVLPSRSKTM LLPFVVKRCH KLLTFLVFAS AIYFAWRTWR AAARLGLAET TWLQSASRDA DWNVFGLPPS AQQWNSAPPP QALTPPRERR NRCAINLYGL PRSFAPIVLP ALRRNVIEPN AKHCCDYFVH YYQVTEEKAG RSGNGGTINP EAIRLLRQAV HDVHNATGSG DVLPKVEFRF DTDDAFWNQY QPLIDRIRNT KDDEGRYLYF PWHSKDYIYP TATDNIIKMW HSVQAAWNLM KAHEIVPYTR VAMLRSDVVF MTPIDVYMVN GKTDARNTKA IIPAFGRHPV SDRFICGPAA AVEIWANQRF ARMENHVQLM LKVKPGFGMH SERFMYHTIF PAIREKGVQI VEDNKMCFVR ARADETVWID DCENPRRVIA AKSIVARMGD KMSRLEQALG RACTTSAEKI HNMWVQDVAN CSSTK
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