Gene PHATRDRAFT_50052 details

Gene Information

• Locus tag: PHATRDRAFT_50052
• ID: 7198744
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011694
• Strand: -
• Start bp: 254801
• End bp: 258318
• Gene Length: 3518 bp
• Protein Length: 932 aa
• GC content: 48%
• Product: predicted protein
• Protein accession: XP_002184930
• Protein GI: 219129509

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0332007
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CGAAACAGTT CACAAATCCT TGTAGCTTCT CAATCGATAG TTTTGCTCTA CCGTACGTGA 
CATGAGACGA ATACCAACCT ACGTTCTCCC TTGGCTGTGG CTTTGTTCCG TTCTCCAGTC 
GCCTATTCCC ACAGTATCAT TCGTTCCGCC CTTCAATCAT GCTTCGTCAT CATCGGCATC 
ATCATCCCAC CTGCATGCAC GCTATACTCC ACCAGTTTCA CAAGTGGTAA TGCCGCCACC 
ACCACCTCCA CCACCGCCCA TTCCAGAACC ACCCCAACTC GATGGAATCG ACCGGATCTT 
ACAGAATCTT GCGCAGAAGT TGGATTCTTC GCTCCCCGAT TGGAAGAACT TGCATTCGCC 
GGTTGGAAAG GATGTACAGG GGCCTTTGAT TGAGTCTGTT GTCTCAATCC AACGTCAGCT 
GGGACAACTG GAGTCCGATG CGGCCTCACA GATTCATCTC GTTTCCATAA AGTTCCAGAG 
CACCGTGCTC CAACAGATTC CCCAATTAGA ACCCGTTCTT CAGAAAGTTA CAGCTTTTTT 
AGCACCGTTA GTGCAAGATC CAACAACCCA ATTGATCGTA TCTGCCTTGG TGTCCTACAC 
GATTGTGTCC AAGTTGCTAG CCATGACCTT ACCACCTCCA CCATTGAAGC CGTATCCCAG 
TGGACGCTAC GACCCCGTGG CCTCCCGGGC CTACTTTGAC CAACGATTGC CGCTGGTGAT 
TGCCCGGAGT TTTTCGATTC TAGTGCAAAG TCTGCAATTC GCTGCTGCGC TACTCCAGGA 
CAAAATGCAG TAAGTGAATT ACGCATCGTT GTTGTGATTG AGTGCCGTCC TTTCTGTTTA 
TGTGTTTGTG TGTGGAGCCG TTATCGATCC TGTATTCGAA TGTTTCTTTT TCCCTTGGAC 
AATTGTGTCA AACTCATACG GAACGATAAT TTTGCTACCG TATAGGAACA AGCTGGTACA 
AAATGAATTT CAACGCGGTG AGCAACTGGC GGTTCTACTC TCACGCCTTG GACCAACCTT 
CATCAAAGTC GGCCAGTCTT TATCGATTCG TACCGATCTA CTCTCTCCGG CGTACGTCCG 
CGGCCTGGCA TCCTTGCAGG ACCAGGTGCC GGCCTTTGAC ACAGCTATTG CCAAACAAAT 
TTTGGAAGTG GAATGGCAAC GTCCCGTATC TGACGTGATT GTTGGAGAGT TAACGTCGCA 
ACCTATTGCC GCCGCTTCGC TTGGTCAAGT GTACAAGGCC ACACTGAAAT CGACAGGACT 
GGATGTAGCT ATCAAAGTAC AGCGACCCAA CATAAATGAA CAAATTGCGT TGGATATGCA 
CTTGCTGCGC GAAGCAGCGC CCGTTCTGAA GAGACTGTTT AATTTGAACT CCGATACAGT 
AGGAACAGTG GACGCCTGGG GCGCGGGGTT TGTTGACGAA TTGGATTACA TTCAAGAAGC 
TCGCAACGGT GCGTTTTTCT CGGAACGCAT TCGTCAGACG CCTCTGAGAG ATGTGGTGCT 
GGCCCCCGCT ATCGTGGAAG ATTTTACAAC CGGATCCATC CTCGTGACGG AATGGATTGA 
CGGGGAACGA CTGGACAAGA GCGAAAAGGG AGACGTGACG GTATTGTGCA GCATTGCCAT 
GAACACGTAT TTAACCATGT TGCTAGAGCT AGGACTACTC CATTGTGATC CGCACCCAGG 
CAATCTCTTG CGCACTCCGG ACGGAAAACT ATGGTACGTG GCTGGTCTTT TCGTCGTTTG 
CATGCACTCA TTGCGAGCAG GTCTCTCACT AACTTTATCC TTCATTGCAG TGTTTTGGAT 
TGGGGCATGG TAACAGCTAT CGACAAAGAC TTGCAGTTGA CTTTGATTGA ACACATGGCG 
CATTTGACGT CGGCAGATTA TGGGGAGATT CCTCGTGACT TGCTGCTACT GGGATTTATT 
CCGTCCGACA AGGCACATTT GATCGACGAC AGCGGTGTTG TTGACGTCCT GGCGGACATT 
TACGGAGCCT GGACCAAGGG TGGTGGCGCA GCAGCGATCA ATGTGAATGA TGTTGTCAAC 
CAGCTACAGG ATTTGACGTC CAAGAAAGGA AACCTCTTCC AGATCCCGCC CTACTTCGCG 
TACATTGCTA AGAGTTTTTC TGTATTGGAA GGCATCGGAT TAAGCAACGA GCCGAACTAC 
TCTATCATCA ACGAATGCGT TCCTTACGTA TCCAAAAGGC TTTTGACAGA CAAAGAAAAG 
ATGGGGCCGG CACTTTCGAC ATTTATTTTT GGACCAGCGA AATCAAATGC AGATCGCATT 
GTAGATTATC GTCGTGTGGA ACAGCTCGTA GAAGGCTTTG GTGAATACAC AACCTCAGCT 
TCTGGTTCTC TTTTGGGGAA GCAGAACATG TCCAATACAG AAATACTGGA AGATGTCGCG 
GACGAGGTGC TCGATTTGGT GTTGACAGAA GAAGAGACCC CTTTGCAAGA AATCTTGTTG 
GAGCAACTAG CAAAGATCAT CACAGCTAGC AGTCGATCTA TCTGGACACA AATCCGGGAG 
CGCTCTGGTT ATCTACCTTC TGGCCGTACT GTGCTTGGTA CAATCGTCGA CCCTTTTGGC 
CTTTTCCGAA CTAGTCCTCT CGTGCGGATG AACGAGCTTG ACGAACGCAC TGTAGAGACA 
ACTCAGAAAC TCATCGCTTT GGCGCAAAAG CAGATTCAAA AGTCCGACAA CCCGGCTTTT 
GATCTTTCTA AGCTTTCTCG AGAAGAGGCA CTACAATTCT CCTCTATTCT GGTGCGAAAA 
GTTTGGGTCC GGAGGGGTGG TGTCGTGCAA ACTAGCAATC GCTTCGCTCG AAAGCTGCTG 
CAATTAACAG CCGAGAAGCT TGAAGCAGGC GAGCGTGATA CTCGTACCTT GCCGATCCGC 
ACAAACTTGA CAAGGACGGA ACCCCTTATT GAAGCTGAGA AGTCATTCAC AGAGCGATCA 
TCAATCGAAT TAGCTGATCA TCATCCCACG CCAGTAAAGG CAGAGAATCC TCGTCTCATA 
GCAGCACGAC GGCGCCTTGA CACTCTCAAA GCTGAAGATG GCAATGGTGT CATTGTAACT 
GAAGCTGCGG AGATTTCTAA TGTAGATATC TAGTGTAAGG ATACTAACGT TTTATGAACA 
GACTTACCGT TAATGCGCCA AAATTTGCTG AGTCGCAACG CTCTTGCGCC AATAAAGTAA 
GGCCAACAAA GAGCGAGCCT TCCGACAGAC ACTTGACGCC TAGATTTGAC GACCAATTCA 
GATTATCGGA TTCACAGTCA AGACAAATTT TGGCATTGTT GATGGTGCGG CAATCAGTCA 
GTGGTTCAGA CAAAGCCGTT CGGAATGATT TATGCTCATT TTATGATCCA TAGAAGCCCG 
TGTCAACAAA AACCGAATTC TTCTGATTGA AAACTTGCTA CTCAAGGGTT TGAGGAGTCG 
TAGCAATGTA CGTAGCAACA TGCGGGCATC GACATTCAAT CAAATACGTC ACTGTCACCT 
TGAATAGGAA CAAACTTTGA CACACTTCCC AGATGTTA 

 

Protein sequence

MRRIPTYVLP WLWLCSVLQS PIPTVSFVPP FNHASSSSAS SSHLHARYTP PVSQVVMPPP 
PPPPPPIPEP PQLDGIDRIL QNLAQKLDSS LPDWKNLHSP VGKDVQGPLI ESVVSIQRQL 
GQLESDAASQ IHLVSIKFQS TVLQQIPQLE PVLQKVTAFL APLVQDPTTQ LIVSALVSYT 
IVSKLLAMTL PPPPLKPYPS GRYDPVASRA YFDQRLPLVI ARSFSILVQS LQFAAALLQD 
KMQNKLVQNE FQRGEQLAVL LSRLGPTFIK VGQSLSIRTD LLSPAYVRGL ASLQDQVPAF 
DTAIAKQILE VEWQRPVSDV IVGELTSQPI AAASLGQVYK ATLKSTGLDV AIKVQRPNIN 
EQIALDMHLL REAAPVLKRL FNLNSDTVGT VDAWGAGFVD ELDYIQEARN GAFFSERIRQ 
TPLRDVVLAP AIVEDFTTGS ILVTEWIDGE RLDKSEKGDV TVLCSIAMNT YLTMLLELGL 
LHCDPHPGNL LRTPDGKLCV LDWGMVTAID KDLQLTLIEH MAHLTSADYG EIPRDLLLLG 
FIPSDKAHLI DDSGVVDVLA DIYGAWTKGG GAAAINVNDV VNQLQDLTSK KGNLFQIPPY 
FAYIAKSFSV LEGIGLSNEP NYSIINECVP YVSKRLLTDK EKMGPALSTF IFGPAKSNAD 
RIVDYRRVEQ LVEGFGEYTT SASGSLLGKQ NMSNTEILED VADEVLDLVL TEEETPLQEI 
LLEQLAKIIT ASSRSIWTQI RERSGYLPSG RTVLGTIVDP FGLFRTSPLV RMNELDERTV 
ETTQKLIALA QKQIQKSDNP AFDLSKLSRE EALQFSSILV RKVWVRRGGV VQTSNRFARK 
LLQLTAEKLE AGERDTRTLP IRTNLTRTEP LIEAEKSFTE RSSIELADHH PTPVKAENPR 
LIAARRRLDT LKAEDGNGVI VTEAAEISNV DI