Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PHATRDRAFT_2382 |
Symbol | TRD5 |
ID | 7198767 |
Type | CDS |
Is gene spliced | Yes |
Is pseudo gene | No |
Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
Kingdom | Eukaryota |
Replicon accession | NC_011694 |
Strand | + |
Start bp | 405055 |
End bp | 412865 |
Gene Length | 7811 bp |
Protein Length | 253 aa |
Translation table | |
GC content | 57% |
IMG OID | |
Product | TRD5 |
Protein accession | XP_002184873 |
Protein GI | 219129390 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GAAGGTACAC TACTCGGGAC GGCTGAGGGG CTTGTAGAGG GTACAGAAGT AGGCATTCGT GATGGATCCG TAGACGGTAC TGACGAAGGA GACATAGAAG GACTGCTGCT TGGTACCGAA GAGGGATTCT GGGAAGGGTT CTCCGACGGA GAAGAGGACG GTTGCACTGA CGGAACAGTC GAAGGCAATG CGCTAGGACT GTTTGATGGC AGCAAGCTCG GCTGCGCCGA CGGGACAGCC GTTGGGTTTC CGCTGGGTGT GGAAGAGGGA ATGCTACTCG GCCTGGCACT CGGCAACTCG GACGGGACTG CTGAGGGATC TCTTGAGGGT AGTAAGGATG GACTCGCAGA GGGAATGGCA GAAGGAGCTG AAGTTGGTTC GAGAGACGGC TGCGCCGATG GCTGCTGGGA GGGTTGACCG GAAGGCAGGC GGGAAGGCAC CAGCGAGGGG ACACTGGAGG GATCTCGTGA TGGAGAAACC GAGGGCAGTC GCGATGGCAC ATCCGTTGGA CTGGCTGATG GTAGTCTGGA CGGGCTTTCC GATGGTGACA ATGACGGCAT GGAGGACGCC AGGGGCGACA AGATCACACC GATGTATCGG ATTGTGGACG CAGTCTTGGT ATCCGCGTCA CCACCCGTTC CGTCGGCGGA ACTGTTGTTT GGCGCCAGGT CCGAGTTAGT AGCGTTCTCG GTGGAAACGA CTTCGACCTC AATACCGGCA CTTCCTAGAA ACATTCCCAC CAGGCCGATT CGCGGTTGAA ACTGCAGCAA GGTGGAATTC AAAAACAGAT CCAGCGCGAT TTCGCGGAGT TCGGGCGTGC CGAGGGTCGA GTTCACCGTG TATACGCCGG AACTGACCTC GGTAAAGGTT ACGCCTGGAA CAGTTCCCAG CGGGACCAGT TCACCAATGA GGTTGCCGCT GTCCATTGGT ACCCGTAATA TCACCGATAG AACTTCGGTG CCGTCCTGGT CGACACTACG ACCGGGATTC ACTCCGATCA AGCCAGGAGC GTTCTCTCGA AGGTTCAGCG GACTCACCAC CGTCACTGTT ACGTTGTCAG CGACCGCGAG GACCTCCACA GGAAAGGGAA AGGTTTGGTT GGAATTCGCA TTCATGGGAG TAGTACGTAC AGTGATATCC AGGATAAAGT CGGTGTCGGA TTGCGGTGGG CCAGTGAGAA TAATGCTGTT CAAAACCGCT CGTATCTGGG CCTCGTTCGC ACCAGGTACG TCGAACGTGC CTCCTGCTGG ATTCACAAAC GTCGCTGTTT GGGTGTTACC TGCGGGATCT ATGTACGTTA GCATTGTCCC GGGCGGAATG CTGGAGATGA CAATGTCGGC GATCTGGTCC GGTCGACCCG TGTCGATCAG TGAGACAGTG ATGTCGGGAC CGATAAGCTC TGGAACATCC TCAACGATAG TTGTAGACCC CGTGATGTTG ACGTTGAAGT CGAATACTGA CGGAGTTTGC GAAGGCAAAA GACTAGGAAT ATTTGATGGA TGACTGGTGG GCATTCTAGA CGGAGAAGAG GACGGTTGCA CTGACGGAAC AGTCGAAGGC AATGCGCTAG GACTGTTTGA TGGCAGCAAG CTCGGCTGCG CCGACGGGAT AGCCGTTGGG TTTCCGCTGG GTGTGGAAGA GGGAATGCTA CTCGGCCTGG CACTCGGTAA CTCGGACGGG ACTACTGAGG GATCTCGTGA GGGTAGTAAG GATGGACTCG CAGAGGGAAT GGCAGAAGGA GCTGAAGTTG GTTCGAGAGA CGGCTGCGCC GATGGCTGCT GGGAGGGTTG ACCGGAAGGC AGGCGGGAAG GCACCAGCGA GGGGACACTG GAGGGATCTC GTGATGGAGA AACCGAGGGC AGTCGCGATG GCACATCCGT TGGACTGGCT GATGGTAGTC TGGACGGGCT TTCCGATGGT GACAATGACG GCATGGAGGA CGCCAGGGGC GACAAGATCA CCCCGATGTA TCGGATTGTG GACGCAGTCT TGGTATCCGC GTCACCACCC GTTCCGTCGG CGGAACTGTT GTTTGGCGCC AGGTCCGAGT TAGTAGCGTT CTCGGTGGAA ACGACTTCGA CCTCAATACC GGCACTTCCT AGAAACATTC CCACCAGGCC GATTCGCGGT TGAAACTGCA GCAAGGTGGA ATTCAAAAAC AGATCCAGCG CGATTTCGCG GAGTTCGGGC GTGCCGAGGG TCGAGTTCAC CGTGTATACG CCGGAACTGA CCTCGGTAAA GGTTACGCCT GGAACAGTTC CCAGCGGGAC CAGTTCACCA ATGAGGTTGC CGCTGTCCAT TGGTACCCGT AATATCACCG ATAGAACTTC GGTGCCGTCC TGGTCGACAC TACGACCGGG ATTCACTCCG ATTAAGCCAG GAGCGTTCTC TCGAAGGTTC AGCGGACTCA CCACCGTGAC TGTTACGTTG TCAGCGACCG CGAGGACCTC CACAGGAAAG GGAAAGGTTT GGTTGGAATT CGCATTCATG GGAGTAGTAC GTACAGTGAT ATCCAGGATA AAGTCGGTGT CGGATTGCGG TGGGCCAGTG AGAATAATGC TGTTCAAAAC CGCTCGTATC TGGGCCTCGT TCGCACCAGG TACGTCGAAC GTGCCTCCTG CTGGATTCAC AAACGTCGCT GTTTGGGTGT TACCTGCGGG ATCTATGTAC GTTAGCATTG TCCCGGGCGG AATGCTGGAG ATGACAATGT CGGCGATCTG GTCCGGTCGA CCCGTGTCGA TCAGTGAGAC AGTGATGTCG GGACCGATAA GCTTTGGAAC ATCCTCAACG ATAGTTGTAG ACCCCGTGAT GTTGACGTTG AAGTCGAATA CTGACGGAGC TTGCGAGGGC ATGAGACTAG GCTGAGCTGA AGGTACACTA CTCGGGACGG CTGAGGGGCT TGTAGAGGGT ACAGAAGTAG GCATTCGTGA TGGATCCGTA GACGGTACTG ACGAAGGAGA CATAGAAGGA CTGCTGCTTG GTACCGAAGA GGGATTCTGG GAAGGGTTCT CCGACGGAGA AGAGGACGGT TGCACTGACG GAACAGTCGA AGGCAATGCG CTAGGACTGT TTGATGGCAG CAAGCTCGGC TGCGCCGACG GGATAGCCGT TGGGTTTCCG CTGGGTGTGG AAGAGGGAAT GCTACTCGGC CTGGCACTCG GCAACTCGGA CGGGACTGCT GAGGGATCTC TTGAGGGTAG TAAGGATGGA CTCGCAGAGG GAATGGCAGA AGGAGCTGAA GTTGGTTCGA GAGACGGCTG CGCCGATGGC TGCTGGGAGG GTTGACCGGA AGGCAGGCGG GAAGGCACCA GCGAGGGGAC ACTGGAGGGA TCTCGTGATG GAGAAACCGA GGGCAGTCGC GATGGCACAT CCGTTGGACT GGCTGATGGT AGTCTGGACG GGCTTTCCGA TGGTGACAAT GACGGCATGG AGGACGCCAG GGGCGACAAG ATCACACCGA TGTATCGGAT TGTGGACGCA GTCTTGGTAT CCGCGTCACC ACCCGTTCCG TCGGCGGAAC TGTTGTTTGG CGCCAGGTCC GAGTTAGTAG CGTTCTCGGT GGAAACGACT TCGACCTCAA TACCGGCACT TCCTAGAAAC ATTCCCACCA GGCCGATTCG CGGTTGAAAC TGCAGCAAGG TGGAATTCAA AAACAGATCC AGCGCGATTT CGCGGAGTTC GGGCGTGCCG AGGGTCGAGT TCACCGTGTA TACGCCGGAA CTGACCTCGG TAAAGGTTAC GCCTGGAACA GTTCCCAGCG GGACCAGTTC ACCAATGAGG TTGCCGCTGT CCATTGGTAC CCGTAATATC ACCGATAGAA CTTCGGTGCC GTCCTGGTCG ACACTACGAC CGGGATTCAC TCCGATTAAG CCAGGAGCGT TCTCTCGAAG GTTCAGCGGA CTCACACCGT GACTGTTACG TTGTCAGCGA CCGCGAGGAC CTCCACAGGA AAGGGAAAGG TTTGGTTGGA ATTCGCATTC ATGGGAGTAG TACGTACAGT GATATCCAGG ATAAAGTCGG TGTCGGATTG CGGTGGGCCA GTGAGAATAA TGCTGTTCAA AACCGCTCGT ATCTGGGCCT CGTTCGCACC AGGTACGTCG AACGTGCCTC CTGCTGGATT CACAAACGTC GCTGTTTGGG TGTTACCTGC GGGATCTATG TACGTTAGCA TTGTCCCGGG CGGAATGCTG GAGATGACAA TGTCGGCGAT CTGGTCCGGT CGACCCGTGT CGATCAGTGA GACAGTGATG TCGGGACCGA TAAGCTTTGG AACATCCTCA ACGATAGTTG TAGACCCCGT GATGTTGACG TTGAAGTCGA ATACTGACGG AGCTTGCGAG GGCATGAGAC TAGGCTGAGC TGAAGGTACA CTACTCGGGA CGGCTGAGGG GCTTGTAGAG GGTACAGAAG TAGGCATTCG TGATGGATCC GTAGACGGTA CTGACGAAGG AGACATAGAA GGACTGCTGC TTGGTACCGA AGAGGGATTC TGGGAAGGGT TCTCCGACGG AGAAGAGGAC GGTTGCACTG ACGGAACAGT CGAAGGCAAT GCGCTAGGAC TGTTTGATGG CAGCAAGCTC GGCTGCGCCG ACGGGATAGC CGTTGGGTTT CCGCTGGGTG TGGAAGAGGG AATGCTACTC GGCCTGGCAC TCGGCAACTC GGACGGGACT GCTGAGGGAT CTCTTGAGGG TAGTAAGGAT GGACTCGCAG AGGGAATGGC AGAAGGAGCT GAAGTTGGTT CGAGAGACGG CTGCGCCGAT GGCTGCTGGG AGGGTTGACC GGAAGGCAGG CGGGAAGGCA CCAGCGAGGG GACACTGGAG GGATCTCGTG ATGGAGAAAC CGAGGGCAGT CGCGATGGCA CATCCGTTGG ACTGGCTGAT GGTAGTCTGG ACGGGCTTTC CGATGGTGAC AATGACGGCA TGGAGGACGC CAGGGGCGAC AAGATCACCC CGATGTATCG GATTGTGGAC GCAGTCTTGG TATCCGCGTC ACCACCCGTT CCGTCGGCGG AACTGTTGTT TGGCGCCAGG TCCGAGTTAG TAGCGTTCTC GGTGGAAACG ACTTCGACCT CAATACCGGC ACTTCCTAGA AACATTCCCA CCAGGCCGAT TCGCGGTTGA AACTGCAGCA AGGTGGAATT CAAAAACAGA TCCAGCGCGA TTTCGCGGAG TTCGGGCGTG CCGAGGGTCG AGTTCACCGT GTATACGCCG GAACTGACCT CGGTAAAGGT TACGCCTGGA ACAGTTCCCA GCGGGACCAG TTCACCAATG AGGTTGCCGC TGTCCATTGG TACCCGTAAT ATCACCGATA GAACTTCGGT GCCGTCCTGG TCGACACTAC GACCGGGATT CACTCCGATC AAGCCAGGAG CGTTCTCTCG AAGGTTCAGC GGACTCACCA CCGTGACTGT TACGTTGTCA GCGACCGCGA GGACCTCCAC AGGAAAGGGA AAGGTTTGGT TGGAATTCGC ATTCATGGGA GTAGTACGTA CAGTGATATC CAGGATAAAG TCGGTGTCGG ATTGCGGTGG GCCAGTGAGA ATAATGCTGT TCAAAACCGC TCGTATCTGG GCCTCGTTCG CACCAGGTAC GTCGAACGTG CCTCCTGCTG GATTCACAAA CGTCGCTGTT TGGGTGTTAC CTGCGGGATC TATGTACGTT AGCATTGTCC CGGGCGGAAT GCTGGAGATG ACAATGTCGG CGATCTGGTC CGGTCGACCC GTGTCGATCA GTGAGACAGT GATGTCGGGA CCGATAAGCT CTGGAACATC CTCAACGATA GTTGTAGACC CCGTGATGTT GACGTTGAAG TCGAATACTG ACGGAGCTTG CGAGGGCATG AGACTAGGCT GAGCTGAAGG TACACTACTC GGGACGGCTG AGGGGCTTGT AGAGGGTACA GAAGTAGGCA TTCGTGATGG ATCCGTAGAC GGTACTGACG AAGGAGACAT AGAAGGACTG CTGCTTGGTA CCGAAGAGGG ATTCTGGGAA GGGTTCTCCG ACGGAGAAGA GGACGGTTGC ACTGACGGAA CAGTCGAAGG CAATGCGCTA GGACTGTTTG ATGGCAGCAA GCTCGGCTGC GCCGACGGGA CAGCCGTTGG GTTTCCGCTG GGTGTGGAAG AGGGAATGCT ACTCGGCCTG GCACTCGGCA ACTCGGACGG GACTGCTGAG GGATCTCGTG AGGGTAGTAA GGATGGACTC GCAGAGGGAA TGGCAGAAGG AGCTGAAGTT GGTTCGAGAG ACGGCTGCGC CGATGGCTGC TGGGAGGGTT GACCGGAAGG CAGGCGGGAA GGCACCAGCG AGGGGACACT GGAGGGATCT CGTGATGGAG AAACCGAGGG CAGTCGCGAT GGCACATCCG TTGGACTGGC TGATGGTAGT CTGGACGGGC TTTCCGATGG TGACAATGAC GGCATGGAGG ACGCCAGGGG CGACAAGATC ACCCCGATGT ATCGGATTGT GGACGCAGTC TTGGTATCCG CGTCACCACC CGTTCCGTCG GCGGAACTGT TGTTTGGCGC CAGGTCCGAG TTAGTAGCGT TCTCGGTGGA AACGACTTCG ACCTCAATAC CGGCACTTCC TAGAAACATT CCCACCAGGC CGATTCGCGG TTGAAACTGC AGCAAGGTGG AATTCAAAAA CAGATCCAGC GCGATTTCGC GGAGTTCGGG CGTGCCGAGG GTCGAGTTCA CCGTGTATAC GCCGGAACTG ACCTCGGTAA AGGTTACGCC TGGAACAGTT CCCAGCGGGA CCAGTTCACC AATGAGGTTG CCGCTGTCCA TTGGTACCCG TAATATCACC GATAGAACTT CGGTGCCGTC CTGGTCGACA CTACGACCGG GATTCACTCC GATTAAGCCA GGAGCGTTCT CTCGAAGGTT CAGCGGACTC ACCACCGTGA CTGTTACGTT GTCAGCGACC GCGAGGACCT CCACAGGAAA GGGAAAGGTT TGGTTGGAAT TCGCATTCAT GGGAGTAGTA CGTACAGTGA TATCCAGGAT AAAGTCGGTG TCGGATTGCG GTGGGCCAGT GAGAATAATG CTGTTCAAAA CCGCTCGTAT CTGGGCCTCG TTCGCACCAG GTACGTCGAA CGTGCCTCCT GCTGGATTCA CAAACGTCGC TGTTTGGGTG TTACCTGCGG GATCTATGTA CGTTAGCATT GTCCCGGGCG GAATGCTGGA GATGACAATG TCGGCGATCT GGTCCGGTCG ACCCGTGTCG ATCAGTGAGA CAGTGATGTC GGGACCGATA AGCTTTGGAA CATCCTCAAC GATAGTTGTA GACCCCGTGA TGTTGACGTT GAAGTCGAAT ACTGACGGAG CTTGCGAGGG CATGAGACTA GGCTGAGCTG AAGGTACACT ACTCGGGACG GCTGAGGGGC TTGTAGAGGG TACAGAAGTA GGCATTCGTG ATGGATCCGT AGACGGTACT GACGAAGGAG ACATAGAAGG ACTGCTGCTT GGTACCGAAG AGGGATTCTG GGAAGGGTTC TCCGACGGAG AAGAGGACGG TTGCACTGAC GGAACAGTCG AAGGCAATGC GCTAGGACTG TTTGATGGCA GCAAGCTCGG CTGCGCCGAC GGGACAGCCG TTGGGTTTCC GCTGGGTGTG GAAGAGGGAA TGCTACTCGG CCTGGCACTC GGCAACTCGG ACGGGACTGC TGAGGGATCT CGTGAGGGCA ATAACGTTGG CAGTGCTGAA GGCAAGAGAC TAGGAAGCGA GGAAGGAAGT AGACTCGGTT CCTCGGAAGG TTTCCAGGTA GGATCGGTTG ATGGGTTTTT TGAAGGCGAG ATCGACGGCA ACCTTGTGGG G
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Protein sequence | GFSDGEEDGC TDGTVEGNAL GLFDGSKLGC ADGTAVGFPL GVEEGMLLGL ALGNSDGTAE GSLEGSKDGL AEGMAEGAED GCTDGTVEGN ALGLFDGSKL GCADGTAVGF PLGVEEGMLL GLALGNSDGT AEGSREGSKD GLAEGMAEGA EDGCTDGTVE GNALGLFDGS KLGCADGTAV GFPLGVEEGM LLGLALGNSD GTAEGSREGN NVGSAEGKRL GSEEGSRLGS SEGFQVGSVD GFFEGEIDGN LVG
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