Gene PHATRDRAFT_49978 details

Gene Information

• Locus tag: PHATRDRAFT_49978
• ID: 7198561
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011693
• Strand: +
• Start bp: 486539
• End bp: 488639
• Gene Length: 2101 bp
• Protein Length: 526 aa
• GC content: 46%
• Product: predicted protein
• Protein accession: XP_002184715
• Protein GI: 219129058

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CAACATTTGA CTGGATTTAC ATCTCAAATT ATAATTCGGA TTTCTTCATC TTCCCGAACC 
GTTTGCCGAG AGGAAGATTG GTGTTCGCAG CTGCTCAGAA AGTCAAGCAG CTGATTGCTC 
CGTCTTGTGT CCGGAGTGAT TGACTGCGAG TCTTAATCCG CTATACACGT TCAGGCAAGA 
GCTCTTGAGC GCAATTTCTC GGTCCCGTTA CATTGTGTTT TCAGCATGAA CGATCTACGC 
TGGCTGCAAG ACACGGCAGG AGAGGCAAAT CAGCAAGAGA ACGAGAGCAC TGACACTTCT 
GCTGAGTCGA GCAAAAGCAA TCAACTCGTC GGAGTCGTGT TATCAAATGT TTTTCTGTTC 
TTTCTAATTT TTGGACTGTC CGCGACTGTC GATGTCAAGA ATATGAAGCG ACAACTCACC 
AATAGATTCG CTATTGGCTG CGGTGTTGCA ATGCAGTTTA TTGTCATGCC ACTGCTAGGG 
TTTGTCGCTG TCGTTTCCCT TCGAAACCAA GGTCTTTCCG AAGCTATGGG AGTTGCGTTG 
TTGGTTGTTA CATCATCTCC TGGAGGATCC TACAGCAACT GGTGGTGTTC GACTTTTAAT 
GCGGATCTGG CTTTGAGCGT TGCCATGACA ACTGTTTCAA GCATACTCAG TATATGCTTG 
TTGGTACGTT CTTTTCCGAC TGGTTTTGTG GGGACCACGT AATTGCTACT CTGTTGTAAA 
AATTACAAGA TCCACCTTCT TACCCTAAAA CTGGTCTTCT AATGTTCCAT TTTTAGCCCC 
TCAATCTCTT TCTATACACC TATCTGGCCT TTGGTATCAC GGATAAGGAC CAAGAGTCTG 
TAGTTGAAGC TTTGGATTTT GGAACTCTCT TCATAACACT TGGAATTGTA CTCGGCGCCA 
TTCTATCTGG TCTCGCAGCT GGCTATCGTT GGGACAACGC CACCTTTCAC GTCTATGCCA 
ATCGGTTTGG TACTATTTCG GGCATGTTAC TCATCTTGTT CTCGGTTTTC TTTTCTTCGG 
GGGCCGATGG GGCTGAGTCT AATTTTTGGA GTCAACCTTG GGCCTTTTAT TGGGAGTTGC 
CTTTCCTTGT TTGCTCGGTA TCGCCCTCGC CAACATTATT GCTCGATCCG TGCGTTTAAG 
TCCACCGGAG ACGGTTGCCA TTTCGATCGA ATGCTGCTAT CAAAATACAG GCATTGCAAC 
ATCAGTGGCT ATAACAATGT TTGATAATGT CGAAGAGAGG GCTCAGGCAG TTGCAGTCCC 
GTTATTTTAC GGTATTATCG AAGCTGTGGT AATCGGCATT TACTGCATTT GGGCCTGGAA 
AGTTGGCTGG ACGAAGGCCC CCAAGGATGA GAATTTATGC CTTGTCATTG CGAGGACGTA 
CGAAATCGAT GAAATTGCTG CAAATGACGA ACCTCAGGAT GAAGAATTCA ACGGCAAAGA 
ACAACTTGTA GAAGCCTCTA GCCCCATGGG TGCTCAAAAG GATAGTTGTT GCATGGAAGG 
ATCAGGAGAA AGGGTGATCG AGCTGCATCA AGAGAACACT GAGAGGGACC GCCTTTACAA 
TGAAGGTTCA GGCTTTTGGG CGAGAATATT TCCACCTATT CTGCTTCGAA AGCTCTCGTC 
TCTGTTGATG AATGGAGTTG AAGTTGACGA GAACTTGGAA GAGCAAGGAG ACGGCGTTGA 
TATCAAAGTC GAAGGAAATT TGTTGGCTCG AAGTCGATTA GGAACAGCTG AAACATCACT 
CTCATCGTCA GTATCCAGTC CGCCACATCG CTCTAGAACG GGCTCAAGCA TGTCCATTGA 
GCAAGGTTGC CTAAACACGG ACGACCCCTC AATACCATGT TTAACCGTTC CCGAAGACTC 
TGAACACGCC TTACCCGACC TACTACCCAT GATCTCCTCG TCAACTGAGC ACTATCTGGC 
TTCAGAAGAC CTTCCTTATG CAAACAGAGC CGCTAAAGAG GAATAGATGT TGTCGCGATA 
GCAACTTGTC ACCGAAACGG ACTCCCGGAC AAAACTACCT GAAGGTAGAC CATACTACCT 
AATGATACTA GAAACCATTC TAAGCAGTGA CCATAAAAAT AAAGCATCAA CAAACACGAT 
C 

 

Protein sequence

MNDLRWLQDT AGEANQQENE STDTSAESSK SNQLVGVVLS NVFLFFLIFG LSATVDVKNM 
KRQLTNRFAI GCGVAMQFIV MPLLGFVAVV SLRNQGLSEA MGVALLVVTS SPGGSYSNWW 
CSTFNADLAL SVAMTTVSSI LSICLLPLNL FLYTYLAFGI TDKDQESVVE ALDFGTLFIT 
LGIVLGAILS GLAAGYRWDN ATFHVYANRF GTISGMLLIL FSSTLGLLLG VAFPCLLGIA 
LANIIARSVR LSPPETVAIS IECCYQNTGI ATSVAITMFD NVEERAQAVA VPLFYGIIEA 
VVIGIYCIWA WKVGWTKAPK DENLCLVIAR TYEIDEIAAN DEPQDEEFNG KEQLVEASSP 
MGAQKDSCCM EGSGERVIEL HQENTERDRL YNEGSGFWAR IFPPILLRKL SSLLMNGVEV 
DENLEEQGDG VDIKVEGNLL ARSRLGTAET SLSSSVSSPP HRSRTGSSMS IEQGCLNTDD 
PSIPCLTVPE DSEHALPDLL PMISSSTEHY LASEDLPYAN RAAKEE