Gene PHATRDRAFT_40760 details

Gene Information

• Locus tag: PHATRDRAFT_40760
• ID: 7198538
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011693
• Strand: -
• Start bp: 323974
• End bp: 325933
• Gene Length: 1960 bp
• Protein Length: 602 aa
• GC content: 51%
• Product: predicted protein
• Protein accession: XP_002184779
• Protein GI: 219129192

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.00139009
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTGTGTCA AACTGAACCC AAATGAAGGG CAGATGGGAG TCCTTTCGAA GAGATCCAAC 
GGCATCAGGA GGACAGTTGT ACGACCGGCG GCGGCCACTT GGAGTCGTTC AGAGTTCATT 
GTCCTCCTCT GCGTGTGGTG GTGGGGTCCT GGAATTTCAT GGGTGAAAGC ACAGAAAAAC 
CGGGGATGCG ATAAGATCAT TGGTAGCTTT ACTGCCCAAG AAATGAAAGA TGCGGGTCGG 
CAATTCCTTG TACCCATTGT AGACAGCACG CTCGTCAACA ACACCGGTAA CGTCCTCTTT 
TTTACTGCTC CATATGACGT TCAGGTAAGG AAGAAAACGC AATTTTTTGG TACTTTTGTC 
CAGGCGTACG TACTGAGAAT ACGGGGTAGA TCTAACTGAC CGCATCCTCT GCAACTTTTG 
AAAAACATGT CGTCAGGTCC TTAAAACCTG CAGCTCTTGC TTCGATACGG ACCGCTGGCT 
TATTTCCATC GATCGAAGCG TGCCAGGTCA GTATCTGCAA TACTGTAGTT CGACCGGGTA 
TGGCTACGAG CAAACCCAGT CCTCTCTAGT TTTTTTGCCA ATAGATCCAT TGACGGGCCA 
AGTTCTACAG CGTGTCAAGT TACGGACATT TGTGTCCTAC GGTGGTATGG GTCACGATTT 
GGGGACAACG CCAACGGTCG AATGGCCAAA TTCCGTACAA GACTTGATCA ATGCGGTCCA 
GAATGAGACA GTATCGACCG AATCCTACCA ACAATTCATG TCCAAATACT TGCCCGGAAT 
GCTGGCAGCC AGTAGTGGTT CCATTGGGTT GTTTCCGGAC TACTTTGGTT ACGGTGAAAG 
CAACAACATG AACCGTGCCT TGTACTGGCC CCGGATGCAC GAGCAGACTA CCGTGGTGAG 
CTACTTGAAG TTACAGCGCT ACATAGCGAG TCTGACGGGA GGATGCACCT TACTTGATGA 
TGCTGTGACC ATTCGCGGGG TTGAAGAGGG CGCCGCTGTT GCCATAGTTG CTTCGGATAG 
CTTGCGACGT TTTGGCTCTG AATCCTTAAC GGTCTTTGCC GGGGCTGGAC CATTGGACAC 
AGAAACATTA CTGTATGATA CAATACAAGC CTACGAGGAC GACAATGCGA CTCCCCAACT 
TGATCTTATC CTTGCATTCA TGGCGTTTTC GTTTTCGGCG GAGATCGCTG GAATGAACAA 
TACCGGTTTT GCCCAGCCTC TCGCAGCAGA CGAGTATAGC GCAGCGGTGG CGAGTACCGA 
TCCTGACCAG GTTTTGCTAA ATTGGTTTGC TGCACCTGAT CCGCCCAGCT CAAGTGTCGT 
GGCATCGCGT GTCCCTATCA ACAGTATCGA CATTGTGCGC CAGTCGGTAC GAGAACTCTT 
TGTGCAAGCT CGGGCCTCGG GAGAATCGTC CCCCTGTCGA ACCTTGGCTT CTGGGGCTGA 
AAATGGTAAA CTATGTGAAG CCATTGTCGA GGCCTCATCC TGGCGGCTTT TGGAAGGAGA 
AACTCGCGAT GTCATCTATC CCTATCAATT GTGTTTCGGT CGAAACGACG AAATCTTTAC 
GAGCAATCAT TACCCCTCCA GAATATTTGC AAACAGTTTG GTCAATTTTT ATCGTGGACC 
AATCGGATTT CCCGACTTGG CCCCAGCGGG CGACCACGAT CGCGTTCGTC AACTTTGTTC 
GCTGGATCCG ATTTTATTTT TTAATTTGGA AGGGCACGCA CCGCAGGACG AAGAAAATCG 
GCCGAACTAC AGGACGCCGC TTTCGGCCGA AGAAATGCTA GTGTGCGAGT CCGGTCCGAG 
CGGATCCACA ATGGCACCAA TGCTTTCGCA GCCAACAGAT TCTCCCTATC CCACGTCCGA 
GCCAATCGCA GCGTCGTCTA TCGAGCCAAC GCGGATCCTT ACGTCAAGAA TAGGAGTGTT 
GGTACTTGTT GCTTATTTGT GTGGGGGTGA ACTGATCTGA 

 

Protein sequence

MCVKLNPNEG QMGVLSKRSN GIRRTVVRPA AATWSRSEFI VLLCVWWWGP GISWVKAQKN 
RGCDKIIGSF TAQEMKDAGR QFLVPIVDST LVNNTGNVLF FTAPYDVQLL LRYGPLAYFH 
RSKRASSTGY GYEQTQSSLV FLPIDPLTGQ VLQRVKLRTF VSYGGMGHDL GTTPTVEWPN 
SVQDLINAVQ NETVSTESYQ QFMSKYLPGM LAASSGSIGL FPDYFGYGES NNMNRALYWP 
RMHEQTTVVS YLKLQRYIAS LTGGCTLLDD AVTIRGVEEG AAVAIVASDS LRRFGSESLT 
VFAGAGPLDT ETLLYDTIQA YEDDNATPQL DLILAFMAFS FSAEIAGMNN TGFAQPLAAD 
EYSAAVASTD PDQVLLNWFA APDPPSSSVV ASRVPINSID IVRQSVRELF VQARASGESS 
PCRTLASGAE NGKLCEAIVE ASSWRLLEGE TRDVIYPYQL CFGRNDEIFT SNHYPSRIFA 
NSLVNFYRGP IGFPDLAPAG DHDRVRQLCS LDPILFFNLE GHAPQDEENR PNYRTPLSAE 
EMLVCESGPS GSTMAPMLSQ PTDSPYPTSE PIAASSIEPT RILTSRIGVL VLVAYLCGGE 
LI