Gene PHATRDRAFT_49800 details

Gene Information

• Locus tag: PHATRDRAFT_49800
• ID: 7198371
• Type: CDS
• Is gene spliced: Yes
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011692
• Strand: +
• Start bp: 357532
• End bp: 359791
• Gene Length: 2260 bp
• Protein Length: 426 aa
• GC content: 50%
• Product: histone deacetylase 1 isoform
• Protein accession: XP_002184530
• Protein GI: 219128670

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

AAGTTGCTCC CTTCAGCCAA CGAGGGACGC CTGAGGTAGG CTCGAAGGCC CCAGATCCTT 
CAGCAAAGTG GTTTCGGCTT CTGCCTTGCT TGTCGGTATC TTGAATCGTT GCGCTTCAAT 
TGTGAAATAG AACGATGACG GGAAAGTCGC GCGTCTCCTA TTTCTATCAT CCGACTTGCG 
TGAGTACTAG ACCAAGACAA CGCGGATCTG CCCAAATTTC CTCGTCCTTT GTCTAAGAGA 
ACCCACCCTT CACAAGCTCT TCTCGATCTA CTAATTTCTT TTGTTCAATT TTCTTTCCCT 
CTAAACGCAT GTTGCTAACA CTTGGCCCGT TCTGATTCCC AGCCTCTGTT CTACTATGGA 
CCGTCACACC CCATGAAACC GCATCGCCTA AAGTTGGCAC ATCATCTCAT TCTGACGTAT 
GGCCTTTACA AGGAGATGGA CTGCTACCGG CCTCACCCTG CAGCAGCAGG TGAAATGACG 
CAATTTCACT CGGAGGATTA CGTCAACTTT ATGAGTAAGG TTACTCCTGA TAATCTACGA 
CAGTATTCGG CATCGATGCA ACGTTTCAAT GCTGGCGATT CCACTGATTG TCCCGTCTTT 
GACGGTCTCT TTGAATTTAC ACAGCTTTAT ACGGGCTCTA GTCTCGACGG AGCTTTACAG 
CTTTGCCAGG GAAATACCGA TATAGCCATC AATTGGAGCG GTGGCTTGCA TCACGCCAAG 
AAGGGTGAGG CTTCGGGGTT CTGTTATATC AACGATATCG TACTGGCGAT TCTGGAACTC 
CTCAAGGTCC ACGCGCGTGT GCTATACGTC GACATTGACG TTCACCACGG CGACGGCGTG 
GAGGAAGCTT TCTACACTAC TGACCGTGTC ATGACGTTTT CGATTCACAA GTACGGAGAC 
TTTTTTCCCG GCACAGGGCA TATCAGTGAT ACGGGTGCCA AAGATGGCAC CGGCTTTAGT 
GTGAATGCAC CGTTGAATAG CGGTATTACG GACGAAACCT ACTTTCACGA TTTGTTCAAA 
CCGGTCATGG AGAAAATCAT GCAGGTATTT AATCCGGGCG CTGTGGTCTT GCAGTGTGGA 
GCGGACAGCT TGACGGGAGA TCGGCTTGGA TGTTTCAATC TAACGTTGAA GGGGCACGCA 
GCCTGTGTAG AGTACGTCAA GAGCTTCGGC GTGCCGACAT TGGTACTGGG AGGTGGAGGT 
TACACAATCC GCAACGTAGC ACGGTGTTGG GCCTACGAGA CGGCCGTTCT ATTGGACAAG 
AAGGACATTC CAAACGAAAT TCCATACAAT GATTATTACG AGTATTATGC CCCAGACTAC 
GAGCTTCATT TGACTCCGAC GCCGGAAGAG AACATGAATG GAAAAGATGC CCTTGAAGAT 
GTACGGACAG AATTGCTTCA GCAGTTGCAA GATTTGCAAG GAGCTCCCTC AGTAGCGATG 
CAACAAGTCC CCCCATCTTT TCAGCGAGCA GAAGCCACTG AAGAGGATCC GGATGTCAGG 
GAAGGGGCTA GCAAGACCAG ATCGGGTGAC GGGGTCCGTA AGCAGCATCC AAGCGAGCTT 
TACGACGAGG TAGATTAAGA GTAAAAGGCT TTACCGAACG ATGGCGAAAT ATCAGTCACC 
TCCGACCTCG TCGGCATTAG TTCGTAAAGC TCTTTCGTAT ATTTCTTCCC AGTCTTTGGA 
ACTCTTGCTC CGAAAAATTT CCTCGTTATG CTGCGCAATG GCAGCCGTTG CAGAGGGGCC 
CGCTTTGTCA ATAGTAGAGG TCGCAACGAT GGACACCGTT GAGTAAGGAC TGCGCTTTTC 
TAGCTGTATG GGATTCTCAT CTTCACCGGC AAACAACCAG GCAGGATGAA AAGGCGCCAG 
TGTGACAGCA TTTCCAACAT GGTCTGGATC TTCGTCTATA GCATCCAAAT ATTGCTCCTC 
CTTTTCAAGA AACCAGTCGT AAAAGGATTC AAAATCCCAT CTCTCTTCGA CTTCTTCGGC 
CAGTATTACA AACGCAATTG CGGTATTTGA ATCCAGGGTC CCCGTTTTCA TTTCCAGGCA 
GAAACGTTCT GCAACCGCAT CTATGGCCTT TTCAAATAAA GTTGTATCCT TGGTCAAGTA 
CAGTCGTATG GCACCTTGAG TGTTTACCGA GGACGAAGCC CAGGGGCATA GATTGTGCGG 
TACCACAAAG TTGGCGCACC AGCTCCAGGT CCGGACAGAA GCCTTTTGCA ATGAAGGACT 
GGGAGGGGTC GATCCAAAGC GAACGACTTC GTCAAACGAG 

 

Protein sequence

MTGKSRVSYF YHPTCPLFYY GPSHPMKPHR LKLAHHLILT YGLYKEMDCY RPHPAAAGEM 
TQFHSEDYVN FMSKVTPDNL RQYSASMQRF NAGDSTDCPV FDGLFEFTQL YTGSSLDGAL 
QLCQGNTDIA INWSGGLHHA KKGEASGFCY INDIVLAILE LLKVHARVLY VDIDVHHGDG 
VEEAFYTTDR VMTFSIHKYG DFFPGTGHIS DTGAKDGTGF SVNAPLNSGI TDETYFHDLF 
KPVMEKIMQV FNPGAVVLQC GADSLTGDRL GCFNLTLKGH AACVEYVKSF GVPTLVLGGG 
GYTIRNVARC WAYETAVLLD KKDIPNEIPY NDYYEYYAPD YELHLTPTPE ENMNGKDALE 
DVRTELLQQL QDLQGAPSVA MQQVPPSFQR AEATEEDPDV REGASKTRSG DGVRKQHPSE 
LYDEVD