Gene PHATRDRAFT_40611 details

Gene Information

• Locus tag: PHATRDRAFT_40611
• ID: 7198386
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011692
• Strand: -
• Start bp: 448979
• End bp: 452395
• Gene Length: 3417 bp
• Protein Length: 1138 aa
• GC content: 48%
• Product: predicted protein
• Protein accession: XP_002184616
• Protein GI: 219128850

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.101521
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTACCGG CCACCAGGCA AATGACTAGC GGAGCTGCTT ACTCGCATTT TTTGGATAAT 
GTATTTTCAC TTCCTCAAGG GCACCCAATC CGACTTAGTT TCGAACAACA AGGGTATAAT 
TCTGTTGATG ATCTCCTCAG TATTTTTGAG AACAAACTAG ATGCCCTTGG ATATGTGCCT 
CCAGCGAGTC CTGACACCCA TGAAGACCCT CAGTGGACCC CATTGCTCAT GGCGCACCGA 
CAGATCCTTC GTCATTTCCT GCGTTGGCAG GCATCACTTG AACGGCAAAA GGGAAGTCCT 
TTGGAAAATT CGGAGCTTGT TGCATTGACT AGTGGAGATT TCATTTTATA CCGACGCTCA 
GCACTCGGAC AAGTCTCTAA TGTTCCGGCC ACCATCAGTC CTTCTCTGAA CAACCAGTTA 
AGTACGTCCA CGAAAGCTCG ATCGGCAGTC GACGAATTCA AGCGAGGAGT CAAGCGTGAC 
AAGACCCACT ATCCTATCCT TAAGGACGAC CGATACTGGG ACAATTTCTA CCGGTCTTTC 
GTGGTCACCG CGGTATCCCA TAACGTCGAA AAGGTACTTG ACCCATCCTA TGCACCGACG 
GACCCCTCAG AGAAGTCTCT CTTTGAGCAA CAGAAGAAAT TTGTGTACTC TGCTTTGGAA 
CATACACTTC AGACAGATAT GGGGAAAAAC CTTGTTCGCG AACATAGTTT TGACTTCAAT 
GCTCAAGAAG TTTTCCGTAA GGTTGTCAAG CACTACACAG AGTCTGCCAG TGCCAAGATT 
GGGTCCTCCA ACACTTTGGC CTACCTCACT ACGGCAAAAT ATGGCACATC CTGGACAGGA 
ACGGCGGAAG GGTTCATCCT TCACTGGAAG AACCATCTTC GCATCTACAA TGATATGGTT 
CCTATGGCAG AGCAGTTGCC TAAACAGCTT TGCCTCAGTT TGCTTGAAAA CGCTGTACAC 
GACATCCCTG AACTCCGCCA GGTCAAGATC ACCGCTACTT TAGACTTAGC TAAAGGAGGC 
ACTCCCCTCA ACTACGAAGG TTACCTGAGT CTATTGCTTG CATCTGCTTC TCTATACGAT 
AAAGGGAACA ACCTTTCCAA TTCTCGTAGT GTCAAGAGCA AGCGTAGCGC CTTTCTGACC 
GACCTCTCGT ATGATCAACC GGACTTCACC GAAGACAATG GAATTGACTA TGATATTGAT 
CTCTCTCCTG CAGTGATCTA TGAGGCCAAT ACTCACAACC GCAAAGTCAG TCCATCTGGC 
CACCGTAATC GCGATCCGGC AACCAATCGA GAGCGTCCGT ATATCCCTCG CGAGATGTGG 
AATCAGCTTT CAGATGATGC CAAAGCCATT CTCCAAGGCC TGTCCGCACC CGACAAAGGC 
CCTACTCGAT CCGGCGATGT CTCGCAACGT GCGTTGGAAG CGAATACCCA CGCCAAGATA 
TCGAACGATA ATGGCGAGTT CAACCGTAGC GAACCAGACA ACCAGCAAGC TGAAGCATTC 
CATGACTGTG ATCAAACGAC GGAGCTCCTT GCACACTTGA CTGACCGTGT GAGTCACATG 
GGAGACGGCG ATATCCAAAA AGTCCTTGCT GCATCCCGCC GTACACCAAT CAATTGTACC 
CAGTCATCGG ACAATCGACA ACAGTCTGTT CAACTCAACG TTCTGGAATA TCAAGTCTCT 
CGTCATTCCG TTGAGAACAA AACTGCTGCT CTAGTCGATC GAGGTGCCAA CGGTGGACTT 
GCTGGCTGTG ATGTCAAAGT TGTGAACAAG ACAGGACGGT CTGCTAGTAT AACGGGTATC 
AACGAGCATA CCCTGTCAGA TTTGGATATT GTCACTGCCG CTGGGTTTGT CGAGTCTCAC 
AAAGGCCCTA TCATTGTGAT TATGCACCAA TACGCCTATC TTGGCAAGGG AAAGACCATC 
CACTCCAGTG CCCAACTTGA GCATTACCGA AACACAGTCG AAGACCGGTC TCGCAATGTT 
GGAGGACAAC AGCGGATTGT TACCTTGGAT GATTATATCA TTCCTCTTCA TGTTCGACAA 
GGCCTCCCGT ATATGGATAT GCGACAGCCT ACCGATAGCG AGTTCGAATC TCTTCCGCAT 
GTTGTGTTGA CTTCCGATAT TGACTGGGAC CCTTCTATTC TAGACAATGA AGTTGACATG 
GTGAACGACT GGTACGATGC AATGCAAGAT CTTCCGGGCA ATGCCTATGT TGAACCACGA 
TTTGACAACA CAGGCCAATA CCTCCACCGC CATATAGCGT ACTATGATCT CGATCGTGAG 
GACGCTATTG ATTGCATTAT CCAGTGTCGT AAGCACAATG TCAAACGCAA TGAACGGGAT 
TATGAAGCAT TACGTCCCTG CTTGGGATGG GTATCCGGTG ACACTGTCCG AAAAACCATC 
ATGGCTACGA CACAGTACGC TCGCGAAGTC TACAATGCAC CGCTACGAAA GCACTTCAAA 
TCGCGATTCC CGGCTCTAAA TGTGCATCGG CGCAACGAGG CTGTTGCAAC GGATACTATC 
TGGTCAGACA CACCTGCTGT TGACAACGGA GCCAAGTTTG CACAACTGTT TGTGGGGAGA 
CGTTCCTTAG TCACCGATAT TTATCCCATG AAAACAGACA AGGAGTTCGT CAATGCCCTT 
GAAGACAATA TTCGCCATCG TGGAGCTATG GATAAACTTC TGAGTGATCG AGCCCAAGTC 
GAAATCAGTA AGAAGGTTGC TGATATTACA CGAGCCTACA ACATTGACCA ATGGCAAAGT 
GAACCTCATC ATCAACATCA AAATTTTGCC GAACGCCGTA TTGCTACTAT TGAAGCTAAT 
ACCAATAGCG TTCTTAACAA AACCGGTGCT CCTGATTCCA CTTGGCTCTT GTGCATTGCC 
TACATCTGCT ATGTCTTCAA CCATTTGTCC CATGAATCTT TGCACGATCG TACACCGCTC 
GAAATCCTTC TTGGTAGCAC CCCTGATATC AGCGTACTTC TCCAGTTTCA TTTTTGGGAA 
CCGGTGTACT ACCGTATCGA AGATCCATCT TTCCCTTCCG ATGGTACCGA AAAGAGCGGT 
CGCTTTGTTG GCATTGCTGA ATCTGTTGGG GATGCTCTCA CTTACAAAAT CCTCACAGAC 
GACACCAACA AGATCTTATA CCGCTCTAGT GTGCGTTCCG CATTGAAATC CGGAGAAATC 
AACCTACGCC TTACGACACA GGATGGGGAG AGTAATTCTA AGCCTATCAA CTTTGTCAAG 
TCGCGTAGAA CTGAAAACAA AAATTCCTAT GCCTTAAAGG ATCTACCCGG TTTCACCCCT 
GAGGACCTTA TTGGACGCAC GTTCCTAACC GATACTCAGG ATGATGGGGA GCGTTTTCGT 
GCACGTATCA CAAGGAAAAT CTTAGATCCC GACAAGCCCT CTGATGTGCG TTTTTAG 

 

Protein sequence

MVPATRQMTS GAAYSHFLDN VFSLPQGHPI RLSFEQQGYN SVDDLLSIFE NKLDALGYVP 
PASPDTHEDP QWTPLLMAHR QILRHFLRWQ ASLERQKGSP LENSELVALT SGDFILYRRS 
ALGQVSNVPA TISPSLNNQL STSTKARSAV DEFKRGVKRD KTHYPILKDD RYWDNFYRSF 
VVTAVSHNVE KVLDPSYAPT DPSEKSLFEQ QKKFVYSALE HTLQTDMGKN LVREHSFDFN 
AQEVFRKVVK HYTESASAKI GSSNTLAYLT TAKYGTSWTG TAEGFILHWK NHLRIYNDMV 
PMAEQLPKQL CLSLLENAVH DIPELRQVKI TATLDLAKGG TPLNYEGYLS LLLASASLYD 
KGNNLSNSRS VKSKRSAFLT DLSYDQPDFT EDNGIDYDID LSPAVIYEAN THNRKVSPSG 
HRNRDPATNR ERPYIPREMW NQLSDDAKAI LQGLSAPDKG PTRSGDVSQR ALEANTHAKI 
SNDNGEFNRS EPDNQQAEAF HDCDQTTELL AHLTDRVSHM GDGDIQKVLA ASRRTPINCT 
QSSDNRQQSV QLNVLEYQVS RHSVENKTAA LVDRGANGGL AGCDVKVVNK TGRSASITGI 
NEHTLSDLDI VTAAGFVESH KGPIIVIMHQ YAYLGKGKTI HSSAQLEHYR NTVEDRSRNV 
GGQQRIVTLD DYIIPLHVRQ GLPYMDMRQP TDSEFESLPH VVLTSDIDWD PSILDNEVDM 
VNDWYDAMQD LPGNAYVEPR FDNTGQYLHR HIAYYDLDRE DAIDCIIQCR KHNVKRNERD 
YEALRPCLGW VSGDTVRKTI MATTQYAREV YNAPLRKHFK SRFPALNVHR RNEAVATDTI 
WSDTPAVDNG AKFAQLFVGR RSLVTDIYPM KTDKEFVNAL EDNIRHRGAM DKLLSDRAQV 
EISKKVADIT RAYNIDQWQS EPHHQHQNFA ERRIATIEAN TNSVLNKTGA PDSTWLLCIA 
YICYVFNHLS HESLHDRTPL EILLGSTPDI SVLLQFHFWE PVYYRIEDPS FPSDGTEKSG 
RFVGIAESVG DALTYKILTD DTNKILYRSS VRSALKSGEI NLRLTTQDGE SNSKPINFVK 
SRRTENKNSY ALKDLPGFTP EDLIGRTFLT DTQDDGERFR ARITRKILDP DKPSDVRF