Gene PHATRDRAFT_40573 details

Gene Information

• Locus tag: PHATRDRAFT_40573
• ID: 7198364
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011692
• Strand: -
• Start bp: 307914
• End bp: 309941
• Gene Length: 2028 bp
• Protein Length: 675 aa
• GC content: 57%
• Product: predicted protein
• Protein accession: XP_002184599
• Protein GI: 219128814

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.338329
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTTCAA CCCCGTCCAC ATCCACGACG ACGTCCACGC CATCATCGCG CTCCAAGGGT 
CTCCCCAAGT CACCCAAGCG GCGTCTACAA CAACCTCCAC TCATTACTAC ATCCCACTTT 
CTTTTGGCTC ACGTCTTTTG CATCGCACTC TATCTTGTAC CCATTCTTAC TACCAGCAAT 
GCCAATACTC ACACCAACAC CAAGTACGGT ATCAACCCAC CGCATACGCT GGCACCCGTT 
CTCGATGAAA TACATATCGT CTCCCCGGAC AATGCCGACG TCAACGACCC CAACGCTACT 
CTACGGAACA TTTTCACCAA CGATTATTGG GGTCGTCCCA TGCAAGCACC CAACAGTCAC 
AAATCCTGGC GACCCTTGTC CATTCTCTCC TTCCGCTACC TCCAAGGTGG ACACGTCGAT 
CAGTGCCAGT GGTGGTGGTG GTTACGGTAC TGCACCGGGT TCTCGTTGCC GCCTCTCCTG 
GCGCATCGAC TCGTCAACGT TGTCACCCAC GCCTGTCTCG CCGAAATGGT CGGGATCCTC 
GCGGCGCAAC TCGTACCCTC GCCGGACGCA CACTTTCGTC GTCTTTTGCG ACTCGTGGCC 
AAAATCGCCT TTGGCCTACA CCCGACTCAC GTGGAAGTCA CGGCCAACGC TGCCAATCGA 
CCCCACCTAC TCGCACTCCT CGCCAGTTTG GCCGCACTCG ACGCCGGTAG CAGTGTTGCC 
TCTAGCACAA CTGTGTGGCC CTGGCTACGC ACTCTTCTTT TCCTCGTGGC CGGATTCTTG 
TCCTGCGAAA CCTTTCTCTT CCAAACCGTA CCCATCGTCG TCACCTACAC CGTGCTGGTC 
TACGTGCAGC TATACCACAA CGCTCCCACG TCCGGGTCGA GTCGTCGCGT CTACCGTCAA 
CGCAACGGGT GGTGGTACCG GCAACTATGG AGTCTCGTAC CGATCGTGAG ACTCCGCGTC 
GCTCTAGTTG TGGCCAGTGG AATCCTCTAC TACACGGCCC GATCCGCCCT CGACACCTTG 
TCCATTCCCG ACGGACTCAT CCGACCGGCC GAAAATCCTT TTTTTGCCCT CCAAGGTTGG 
CATCGCGTCC GCAACTACCT CTACATTGTT GCCGTACACG TCGCCAAGGC TTGGGATTTG 
GACGTGCTCG GATTCTCACA CGAGTACGGG TACAATTGCG TGCCGGAAAT TAACGAATGG 
ACCGATCGAC GCTTGCTGCT ACCACTCACA ATTGCCGTAC TCTACCTGGC CACGGCCGTC 
TTCTTTCTCT TGCAACACGC CCGTCGTCGC CAAGTCTGGT CGATTCCCTT CCTCCTCTTT 
GTCGTGCACG TTTCCTGGAT GGTCACGCTC TTTCCCGTCG CCGGGATTGT CAAAGTCGGC 
ACCTTTGTGG CGGACCGCAT CGTGGTGGCG AGCTCCGTCT CGACCAGTAT CGTGCTCGCC 
TACGTGGCGA CCCGCTGGAT GACGGCGCCC CGGTCCCGCA CGGCCGTCAC ACGCCGCGTG 
ACCCTCCTCG CCCTCACGGT CGGTGTCTTT CAAACCCACC GTGTTTACGT CCGTACCACG 
CAATGGATGG ATTCCTACCC TCTCCTCACG TCTAGTCTCG TTACCTGTCC ACGGTTCGCC 
AAGGGACATT TGGAACTGTC CAAAATATAT TCCGGACTCT ATCCGGAACG CTTCAATTTA 
ACCACGGCAC GGTGGCACTT GGCGCGGGTC GAAGATATTG ATCCCACTTT TTGTGACGTG 
CACCAGCAAG TAGCCCACGT GGCCATTCAG GAACGGCGGT ACGAAGAATT CGAAGAGCGC 
CTGGTCCAAG CCTTGCTCTG TCCGTTTACC CTGGGCGGTG CCACGGATCT GTGGCAACGA 
TACTGGAAAA TTACGTTAAA TTCGCAACAG AATCCGTCCG ACGTTGTTGC CGCGGCCGAA 
CAACGCTACC AGACCTACAT GAAACGCATC CAGGTGGCCA TTCAACAAGA ACAAGAAAAC 
GAGCCGGTCC CCGTATCTAC CTCACCAATC GTGGGATGGC AAAAATGA 

 

Protein sequence

MSSTPSTSTT TSTPSSRSKG LPKSPKRRLQ QPPLITTSHF LLAHVFCIAL YLVPILTTSN 
ANTHTNTKYG INPPHTLAPV LDEIHIVSPD NADVNDPNAT LRNIFTNDYW GRPMQAPNSH 
KSWRPLSILS FRYLQGGHVD QCQWWWWLRY CTGFSLPPLL AHRLVNVVTH ACLAEMVGIL 
AAQLVPSPDA HFRRLLRLVA KIAFGLHPTH VEVTANAANR PHLLALLASL AALDAGSSVA 
SSTTVWPWLR TLLFLVAGFL SCETFLFQTV PIVVTYTVLV YVQLYHNAPT SGSSRRVYRQ 
RNGWWYRQLW SLVPIVRLRV ALVVASGILY YTARSALDTL SIPDGLIRPA ENPFFALQGW 
HRVRNYLYIV AVHVAKAWDL DVLGFSHEYG YNCVPEINEW TDRRLLLPLT IAVLYLATAV 
FFLLQHARRR QVWSIPFLLF VVHVSWMVTL FPVAGIVKVG TFVADRIVVA SSVSTSIVLA 
YVATRWMTAP RSRTAVTRRV TLLALTVGVF QTHRVYVRTT QWMDSYPLLT SSLVTCPRFA 
KGHLELSKIY SGLYPERFNL TTARWHLARV EDIDPTFCDV HQQVAHVAIQ ERRYEEFEER 
LVQALLCPFT LGGATDLWQR YWKITLNSQQ NPSDVVAAAE QRYQTYMKRI QVAIQQEQEN 
EPVPVSTSPI VGWQK