| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_23467 |
|---|
| Symbol | |
|---|
| ID | 7198449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011692 |
|---|
| Strand | + |
|---|
| Start bp | 244018 |
|---|
| End bp | 245646 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 537 aa |
|---|
| Translation table | |
|---|
| GC content | 52% |
|---|
| IMG OID | |
|---|
| Product | dehydrogenase methylmalonate-semialdhyde dehydrogenase |
|---|
| Protein accession | XP_002184508 |
|---|
| Protein GI | 219128624 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CCCAGGCAAA GCACCATGAC GATAATCAGG CCCCTTCTGG CCGCAGTATC TGCAAACCGA
TCTTTCACCC CCTCAAATTC AAAGAGATTC CTAGCTTGTC AGCCAAATGT CGCTGGAAAA
TGGCTGAACG AAAAGGATGT CTACAACTAC TTCACCAACA ATGCGTTTGT GACGTCTTCT
TCCAGCGATC GCCTGCCGGT TATCAACCCC GCCACGCAAC AGCTTTCAGG AAATATTGCA
GAAAATACAG CCGACGAGTT CGATGAAGTC GTACTAAAGG CCGTTCACGC GTACGAAGAC
TGGAAGCTGG TTCCCGTTCA GCAACGACAG AGAGTGATGT TGGAATATCA GCGTCTGATA
CGTGATCGGA CCGCTGACCT GGCCGGCCTC ATTACGGCCG AAAACGGCAA GACGCTAGCG
GACGCCAAAG GTGACGTGTT TCGGGGCCTC GAGGTTGTAG AATCTGCCTG CCAGGTAGCA
CCTCAAATGC TTGGGGATTC CTTGGCGGGA GTTTCGAGTA CAGTCGATAC CGTCTCATTC
CGAGAACCGC TTGGTGTCTG TACCGGTGTT TGCCCCTTCA ACTTTCCAGC CATGATTCCT
TTATGGATGT TTCCACTGGC TGTGGCAAGC GGGAATTCGT TTATCTTGAA GCCGTCCGAA
AAGACACCTA GTGCTAGCCT TCTACTGGCG GAGCTGGCGG CCGAAGCTGG CTTGCCAGAG
AACGTCCTAC AAATTGTTCA CGGTGGGAAA GATACCGTGG ATCGCATTTG TAGCCACAAA
GATATACAAG CGATTTCGTT TGTCGGGGGG AATTTCGCGG GAGAGTACAT TTTTCAACAA
GGTACGGCAC ATGGTAAACG GGTGCAGTCC AACATGGGGG CCAAAAATCA CGCAGTCGTC
CTGCCCGACG CCGACCGTGG TGCCACGGTA CGCGCTCTCG TGGGGGCAGC CTTTGGTGCC
GCTGGTCAGC GCTGCATGGC CTTGTCGACG CTAATTCTTG TCGGAGAGGC CCAAGATTGG
CTCAGTGATA TCGTTGAGGA AGCAGCCAAG CTCAGCGTAG GTGCAGGTTG GGAAGACGGA
GTCGACGTGG GGCCATTGAT TACACACGAC GCCAAGAACC GAGTCTTGGA TATCATTCAT
CGATCCATCG ACCAGGGAGC AGAGATCCCG TTAGACGGCC GTGACGTCCA CGTCAATGAA
TATTCAACAG GAAATTTCCT TGGTCCAACG GTGTTGTCGA AGATCACACC TTCCAACATC
GGCTACCAAG AAGAAATATT TGGACCCGTC TTGGCGTGTC TCGAGGCGAA AAGCTTGGAA
GAGGCTATGC AAATTGTCAA TAGTAATCCA TACGGGAATG GATGCGCGAT ATTTACAGCT
TCTGGCGCCG CGGCACGAAA GTTTACGAGA GAAATTCAGG CCGGCCAAGT TGGCATCAAT
GTGCCGATCC CGGTACCGCT TCCAATGTTT TCCTTCACAG GCAACAAGGC CAGCATTCGT
GGAGATCTAA ACTTTTACGG CAAATCTGGG GTTCAGTTCT ATACGCAATT GAAAACCGTG
ACTAGCAACT GGCCGTACCG CTCGGCCGAT TTGGGGGGAA TGACTATGCC GACCATGGGT
AAAGAATAA
|
|---|
| Protein sequence | MTIIRPLLAA VSANRSFTPS NSKRFLACQP NVAGKWLNEK DVYNYFTNNA FVTSSSSDRL
PVINPATQQL SGNIAENTAD EFDEVVLKAV HAYEDWKLVP VQQRQRVMLE YQRLIRDRTA
DLAGLITAEN GKTLADAKGD VFRGLEVVES ACQVAPQMLG DSLAGVSSTV DTVSFREPLG
VCTGVCPFNF PAMIPLWMFP LAVASGNSFI LKPSEKTPSA SLLLAELAAE AGLPENVLQI
VHGGKDTVDR ICSHKDIQAI SFVGGNFAGE YIFQQGTAHG KRVQSNMGAK NHAVVLPDAD
RGATVRALVG AAFGAAGQRC MALSTLILVG EAQDWLSDIV EEAAKLSVGA GWEDGVDVGP
LITHDAKNRV LDIIHRSIDQ GAEIPLDGRD VHVNEYSTGN FLGPTVLSKI TPSNIGYQEE
IFGPVLACLE AKSLEEAMQI VNSNPYGNGC AIFTASGAAA RKFTREIQAG QVGINVPIPV
PLPMFSFTGN KASIRGDLNF YGKSGVQFYT QLKTVTSNWP YRSADLGGMT MPTMGKE
|
|---|
| |