| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_55070 |
|---|
| Symbol | HSF2 |
|---|
| ID | 7198250 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011691 |
|---|
| Strand | - |
|---|
| Start bp | 155300 |
|---|
| End bp | 156914 |
|---|
| Gene Length | 1615 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | |
|---|
| GC content | 49% |
|---|
| IMG OID | |
|---|
| Product | DNA-binding heat shock factor |
|---|
| Protein accession | XP_002184407 |
|---|
| Protein GI | 219128411 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0000184897 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GAAAGACAAG CACCATTAAT ATAATATCGA CTCGCTCGTT CGAGTATGTG CAAACCAGAC
GAGACCCACA CCATCAATCC ACTCTCTCTT GGAAATACTA GTCTTCTTCT TTCTCTTCTA
ATCTCAAAGG TCGAAGAAGC AGCCGCTGCA CTTGCGCAAG AAAGTCCAAA GCGACGTCCT
TCGCTCTGAG CGCAGGGCAG GAGGGGTTAA CCAGTTCGGA ACCCGTGAAA ATACAGCCAG
TTGTGCTGAG TGCAGGAGTC AGCAGCCCGC TCATAGACGG AGCTCTTTGT CCAAAGGATA
GATCAGGTCT ACGTCGTGCA GCTGCGACAG CCGCAACGTC CAAAATAATG ACTTACGCAT
CTCCCAATAA TGTTGTCTCT GCTTCGAGTG ATCGAGACAG TAGCAATGAT GAATGCTCGA
AAACTACTGA CCGACCCAGA AGACGCAAAC GGAAAGCTCG AAATCATTAT GGAGAATGTG
AATCTACAGA TACTGGACAC AGGAGGGTTT ACGTCAACCA TAACTATCAT GATTACGCCG
GTTGCCCCAA TCGAGTCCTC AACGAAGTTT ATACACTTGA ATCTATCGAG GCTAGAAAAA
GCAGGGGCGG CACCAGCACT CCTTTCCCGA AAGTATTGCA TCGGATGCTG GATCAAGCTG
AGGTGGATGG TTTTAGTGAA ATTGTGTCGT GGCAACCTCA CGGACGTGCA TTTTTAGTGC
ACGACCAGGC TCGGTTCGTT GCGGAAGTCA TGCCACGTTT CTTTCGCCAG ACGCGGTTCT
CATCCTTCCA GCGCCAATTG AGTCTCTACG GCTTTTTGCG TTTGACCCGT AAAGGAGCCG
ACCACAACGC ATACTACCAT GAGCTCTGTC TACGAGGTAT GCCTGAGTTG CTCGCCCAGA
TGCAGCGCAC CCGTATCAAG GGATACTGGG TGCGGCAGTC CTCCTCTCCG GAAAGTGAGC
CAGACTTTTA CAGCATGCCG ACCGTCGAAG AATCTATTGA AAACCGACCT CTTCAATCCG
ACAGTACTCA AGCACTTTCA AGTGGCAATA TTATTATTGA TGGTAATGAT TCCCTTGAGC
CCATTCCGGT AAACCCGGTT TCCAACTTGG GCGTATCCAG AGCGCCTAGT TTTGGTAAGC
TCGAACCAGG CCAATTCGCT GCTTATGGCG GTTGTATGAA ACTACCTCCA ATGCCGCCCC
TTCGGGATGG TCCTCTCTGG TCATCAGCTG CATACTTGAA AGAATTCCCT GTGGACGAAG
ATATGTCAAT CAGTATCGAT GCATTTATTG ACTCCATTGC TCCACATGCG TCGAATCCGT
CCGACACTGC TGTTCTAGAA CCGCTACCAG CCTACTCTTC TACCAGTGAC ATGAGAGAAG
ATCTAGTCAA CTTTTTGTCG AATGTCGACC TTAGCTCAGA AGACGGAGAC AACAGCGAAT
TTTACCGGAA TGAAGAACAT TTGGAGAGGT TGCACAGCAG CAAGCAAGCA CAAAATGGGA
TGGAAATGTG ATCAAAGTTC CGTTTCTTCG GCGGACTTTC CATCGAGGGC AAGGCATGCA
TCTGCAGACA ATATTTACTG TTGGTTAAAA GCTTAGTGAA AAGTTCATGA TACAA
|
|---|
| Protein sequence | MTYASPNNVV SASSDRDSSN DECSKTTDRP RRRKRKARNH YGECESTDTG HRRVYVNHNY
HDYAGCPNRV LNEVYTLESI EARKSRGGTS TPFPKVLHRM LDQAEVDGFS EIVSWQPHGR
AFLVHDQARF VAEVMPRFFR QTRFSSFQRQ LSLYGFLRLT RKGADHNAYY HELCLRGMPE
LLAQMQRTRI KGYWVRQSSS PESEPDFYSM PTVEESIENR PLQSDSTQAL SSGNIIIDGN
DSLEPIPVNP VSNLGVSRAP SFGKLEPGQF AAYGGCMKLP PMPPLRDGPL WSSAAYLKEF
PVDEDMSISI DAFIDSIAPH ASNPSDTAVL EPLPAYSSTS DMREDLVNFL SNVDLSSEDG
DNSEFYRNEE HLERLHSSKQ AQNGMEM
|
|---|
| |