Gene PHATRDRAFT_49618 details

Gene Information

• Locus tag: PHATRDRAFT_49618
• ID: 7198260
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Phaeodactylum tricornutum CCAP 1055/1
• Kingdom: Eukaryota
• Replicon accession: NC_011691
• Strand: -
• Start bp: 216490
• End bp: 219596
• Gene Length: 3107 bp
• Protein Length: 958 aa
• GC content: 52%
• Product: predicted protein
• Protein accession: XP_002184422
• Protein GI: 219128442

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTTATCGTCC TAGAGTTACT GATTCAATCA CAATCGTACG ATCGTACGCA TACACAAAGC 
TCACCATGAG AGTGACAGCT GCAGTAGCCG GGTCCTTGTG TTTGCTGGGG ACGTCGGTGG 
AATCCTTTGT CTTCCCGGCA CGCAAGAGTC CAAGGTTGTC CTTCCCTGCG GCAAATCCAG 
TCGCCTCCTC CTTTCGCAAT GCGGAAGCTA TAGTCAGTTT GCACGAGAAA AAGAACGACA 
TAGATATCGA CGATGTTACG AAAGAAGCGG AAGAAGCTTT GGCGGCGGCT GAAGCAGCGT 
TAGGAGGTGG ACTTGGAAAC AACAAGCAGA CGGTAAATCC ATCCCCGAGC ACACTGTCCG 
AAAGCACGCC ATTGCCATCT CCAAATAACA AAACGACGCC TTCATCTTCG CCTTCAAAAA 
CGCCTCCAGC ATCTTTAAAA AAAACTCTGC CGCAGCCTTC TTCCAAAATA GCGCCTCCGC 
CCTCGCCTTC TCCGCAAACA AAGCCCCCTC CCACTCCCCC TAGTCCTCGA GAGTTGGCTG 
AACAAGAGGC TCGTCGTAAA AAAGCCCAAT TCTACCGCAA AGACGCTATT GCTGCGGCTG 
TTGGTGCGGG ATTGCTAGGT GCAGCAGGAG GAGGCCTACT CTGGATGGAG TTTCCAGAAT 
TCGGTATCGC CTTACGAGAC GCTGTCAGCG CCGACATTCC CATGTACGTG CCTCCTCTTA 
TCGGCGCTGC CGTTTTGGGT GGAAGTGCAT TTAACAGTGC TTCGCAAGAT AATGCTGTGG 
GCACCCTTAC CCGTGGAGTA TTTGGCAGTA CCACCAAAGC GATCGGCGGA GGGATTGTGG 
GAGCAGTTAC TGGTGTCACC GGCTCTGTGA TCTCAGGCAT TGTAGCCATT CCTAAAAGAG 
TGGTTAACGC GGCCGCTCAG AAAGTTCGGG AGACTACAGA CGGAATCAAG GCCATTCCGT 
CAAGGGTTCA GGATGCTGCG GCCCGCAAGG TCCAGAGAAC AGCCGAGGAT ATTCGAGCCA 
TTCCCACCAA AGTTTCTTCG GCGGCAAGCA GAGCCGCAGA AGAAGCCGCT CGGGAGATCA 
AGGCAGCCCC CGGTCGGGTC GCAAAATCAG CGGAAGAAGC ACTGGAAAGA TCAGTGGAAG 
AGACCAAGAA GAATATTAAC AGAATTGGAG AAGATATAAA AGCCTCTCCC TCAAAGGCTG 
TGGATGCCTT CGAAGCAAAG GTGACGGAAG TCTTCGAAGC AAAGCCCAAA GAACCGCAGG 
CACCTTTGCG TCCTCCTCCA CCTCTAGTCA GGAACGATGC CAAGTCTTCG TTCCCAAACC 
TCCAGATTGA CCTGCCCAAG CTTGAGGTGC CGAAGATTCG CGTACCCAAT CTCGATGCGC 
TCAAGATTGA CACGCCGAGT ATTGAGATGC CTAAGACTCC AGTGCCAAAG AAAGAGCGGG 
ATGATGGCTT TGTTTTTGGT GAGGTTGGAC TCAAGAACTT TATTAACGCA CCGGTATCAA 
AGGATTCCGC CCCGTCCAAA CCAGCTACGG TTCCCGAGAA GTCGCAGCAA CAGCGGGCAG 
CTGCACAAAA GCGCGACCGC GCTCAAGCGA AAGTAGCATC CGAAAAGCAA CGTCGAGAAC 
AAGCTAAAGT GGTGGCGGCA GAAAAGCAGC GCCAGGAGCA AGCCAAAGCG GCATCGGCCG 
AAAAACAGCG TCAGGAACAA GCCAAAGCGG CATCTGTTGA AAAACAGCGA CAGGAACAAG 
CCACTCGACG TGCTAAACAA GAGAAGGCTC GTCAAGAGCG GCAAAAGCGT CTTGAAGATA 
TAGAAGCAAC TAAAAAGGCC AAGTTGGACC AGCGAATGCG CGAAACAGCA AAGCAGACGC 
AGATTGCCGA ACAGAAGCGT TTAGAGGCGG AACGCCGAAA GAACGCATCA GGTTCGAAGC 
CACGTCCTAG CTTTCAAATT CCCCGTCCCA GTTTCCGTAT TTCTCCCGAC TCTGACGCTA 
GCAAACCTCG TCCCTCATTT TCGCTAGGTG GAATGCCCAA GCAGCAGAAG AGTCCCTCAG 
AAAGCAAACC CCGTCCGTCC TTTCAATTGA ACCTCGGAGG GGGTAGCAGC AAAGCTGGAG 
AGTCTGGTGT CAAACCTCGC CCTTCCTTCC AATTGAACCT TGGAGGCGGC AGCAGCAAAG 
TCGAAAATTC CGATAGCAAA CCTCGTCCCT CTTTTCCACT AAATCTCGGA GGTCGCGGAA 
GTGATGCAAA TGTTGTCAGT AAGCCTCGTC CTAGCTTTTC CCTCGGTGGA GGCGGCGGGA 
CCCAATCAGG AAAGAAAGCT CCCCGCGGTG TCCCCACTAT TGTGCGCTGG AAACAACGCC 
GAGATGGCGG TATAACCGGC TTCATCTACG GTTCTCCAAA TTTCGACGAT GGAGATCGGG 
TGGAGACTAC AGCAATCGCA ACAGGAGATG TTGCTAATGG TGGCGTCGTT AAGACGGGAA 
GTGGTTCTAG ATACTTCTTA AGTGAGACCC CTCCAATGGG AGGGAAAGCG AAAGGCGGCA 
ACGATGCCGG CGCTTTGAAA TCCCTGCTCA GTGCTATTCC AGGAGCAACC ATCAATCTCT 
CCCGAAGCAG GAAGACTCCA GCGGAAGTAA AGGCTGAGGA GACTTTGAAG AAGGCGGAAG 
CGGCACGACC GAGAACATTT TCACTATTCG GTTTGGGTGG AGACGGGGCA GACTCCAGAC 
CACCTTCCCA GAAGGAAAAG GGCTCTGGCG GAGGCAAAAA GCCCGCAGTG ACGGCACCCC 
GCGGAGTTCC TACTTTGAAT AGATGGAAGA AGAATAGAGA TGGATCCGTC ACTGGTTTTA 
TTACGGGATC ACCCAACTTT TCTGAAAATG AGAAAGTTAC AACATCCCCG ATTACGCAGG 
GCACCGTGAA GTCCACTGAA ACTGTGAAGA CTGGAAGCGG CTCTCGATAT TTTCTTGCAT 
GAATGAGTTG AAAATCTCTG AGTTCATCAA AACAACCTGT ACTATGTGTT GGAGTCCTTT 
GATAGCATTG ACGATAAATT AATAGGATGA AGCAAGGGCA AATCCATTGA ATGCATAGCT 
TCTACAAACG CATCCAAGCT TCAAAGCATG CATTTTAACT AAGAAAT 

 

Protein sequence

MRVTAAVAGS LCLLGTSVES FVFPARKSPR LSFPAANPVA SSFRNAEAIV SLHEKKNDID 
IDDVTKEAEE ALAAAEAALG GGLGNNKQTV NPSPSTLSES TPLPSPNNKT TPSSSPSKTP 
PASLKKTLPQ PSSKIAPPPS PSPQTKPPPT PPSPRELAEQ EARRKKAQFY RKDAIAAAVG 
AGLLGAAGGG LLWMEFPEFG IALRDAVSAD IPMYVPPLIG AAVLGGSAFN SASQDNAVGT 
LTRGVFGSTT KAIGGGIVGA VTGVTGSVIS GIVAIPKRVV NAAAQKVRET TDGIKAIPSR 
VQDAAARKVQ RTAEDIRAIP TKVSSAASRA AEEAAREIKA APGRVAKSAE EALERSVEET 
KKNINRIGED IKASPSKAVD AFEAKVTEVF EAKPKEPQAP LRPPPPLVRN DAKSSFPNLQ 
IDLPKLEVPK IRVPNLDALK IDTPSIEMPK TPVPKKERDD GFVFGEVGLK NFINAPVSKD 
SAPSKPATVP EKSQQQRAAA QKRDRAQAKV ASEKQRREQA KVVAAEKQRQ EQAKAASAEK 
QRQEQAKAAS VEKQRQEQAT RRAKQEKARQ ERQKRLEDIE ATKKAKLDQR MRETAKQTQI 
AEQKRLEAER RKNASGSKPR PSFQIPRPSF RISPDSDASK PRPSFSLGGM PKQQKSPSES 
KPRPSFQLNL GGGSSKAGES GVKPRPSFQL NLGGGSSKVE NSDSKPRPSF PLNLGGRGSD 
ANVVSKPRPS FSLGGGGGTQ SGKKAPRGVP TIVRWKQRRD GGITGFIYGS PNFDDGDRVE 
TTAIATGDVA NGGVVKTGSG SRYFLSETPP MGGKAKGGND AGALKSLLSA IPGATINLSR 
SRKTPAEVKA EETLKKAEAA RPRTFSLFGL GGDGADSRPP SQKEKGSGGG KKPAVTAPRG 
VPTLNRWKKN RDGSVTGFIT GSPNFSENEK VTTSPITQGT VKSTETVKTG SGSRYFLA