| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PHATRDRAFT_49588 |
|---|
| Symbol | |
|---|
| ID | 7198246 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Phaeodactylum tricornutum CCAP 1055/1 |
|---|
| Kingdom | Eukaryota |
|---|
| Replicon accession | NC_011691 |
|---|
| Strand | - |
|---|
| Start bp | 129515 |
|---|
| End bp | 131851 |
|---|
| Gene Length | 2337 bp |
|---|
| Protein Length | 778 aa |
|---|
| Translation table | |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | predicted protein |
|---|
| Protein accession | XP_002184401 |
|---|
| Protein GI | 219128398 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAACT TCCGGTTGCA ACGAACAATC CTCAAGTCAA GGTACACGAA TGCTCGCGAG
GTCGCCGTTA TTCTCTCCCT GCTCGTAGCT TTGCCGTACT GCATATTCCC GTTGACGGTC
GTATCCGCAC AGCAAACGTA TACACCAGCA GGGATCCAAT CCGGTCCTGA TGTAGTGGGG
GGTTCGTTCG CGAGTGCCGC AATCTTCAAC CCGGCCGACA ACACTGTGGT GGTGACGGGC
ACCACGTACG GACGCTTTTG GCAGGATCGT GTCGACGAGG CTGATAGTTC TCCAGGATGT
TTTCTTGTAA CGGCGCGCTT GCCCGAAGTG CACCACGGAG ATATTGCGTG GGTCGATTCG
GGCAAAATAT CCACGATCGC TCACAAGGAA GGCTGCAGTA GTATTGCACT CCGTGGATCG
AAGCTCTTTT TGTCGGGGCA CGCCGACACG GGTGGGGTTT TGGAAGAACT CCGCAACAGT
GCCTCCATCG TTCCATCCAC GCAGTACGGG ATGCTGCTGG ATATGGACTA CGACGGTGGC
AGTAGTCGGG TTGATATTGT GGGAGGTCGC GTTCTGCAGG ACAGTCCCGT CGTCTTTCCA
GTGGCCGTGG TGGCATTGCC GGGAGAGTCG GAAGTGTACG TGGCGAGTAT GGCAACGGAT
AGCACTGTCG ATCACGACTA CAGCAATGAA CAGCTCGACC CACAACGCTT CTTTCCCTAC
GGCTCAAAGT TTCATATGAC GGTGTCCAGG CTCAGTCTTA ACGGTGCTCG CTTTCAAGAA
GGCACGGTGC TCAATACTCT CGATGAGCAG TGGACTAAAC CATACTCGAC TAAAGAAGCC
GGAGACGTAT ACGTTGCTGG TATGATCAAA CTTTCGAATG AGATTCTCGT TGTCGTCGGA
TCGACAACCG GCTACGGCGG AGGGGTGGGC GGCCTTGTTG ATACGGGTCC CGATATGGAC
GGCTTTGTTA CCAAATTGCA TCCCGTAACG GGAGGTGTAC CTGTTGAACC CGGTAATCCT
AAACACCAAG GTACCGTGCG GATACAATCG GTCGATGGCA AGGATGACTT TGTGGCGGGA
GTCTGTCACG ACGAATATCG TCACGATCCC GGGCACATTT ATATTGTTGG TTCCACTTCG
GGTGATTTGG ACCGCTCTGG ATCCGCAGCG GCACCGCGCG GTTATCTAAT GAAACTGGAC
TTCGAGTCCT TGCAGCCTGT ATGGACCAAA GTGCTGGCAG CAAATGCGGC CACGACAACC
ATTGCAAACG CCACTAGCGG TGGACGGCCC TCCGTTCGGG GTGTCTCGTG CGTCGTGACT
CCGGACGGTG AAGCCGTCTA CGCCGCTGGC GTTGTCGAAA ACAGTGGCGT CCTACCCCTT
TCCGGTACCA TGACCTCGTT TGGGGGGAAA GACATCTATG TGGTCAAATA CGATACTGTG
GACGGGAAAG AGGGATTTGT CCGCCAAATC GGATCGTCCG AAGACGATGA AATGGCCATG
CGCGGGGGTT TACTGACGGA TTCTCAAGGA AACGCCGTTT TGGTTGGTCA TACGGCTGGT
TCCTTGTACC GGACGCGTGA GGAAAGCGAA AAGGCAGGCG TATCGGATAT TTTCTTGCTT
ACTATTTCTC GTTATGATGG AAAATACCAA TTTCCGATCG AACATCCGGA ATATGGACAG
CAGGTTGAGG AGGACGTTGT GTCGGGCCCG GGGTCTGCGC CACAGACACC GGAAATGTCT
GGTACCACGA TGAACGCCAA AGCACCCTCA ACGACAGGAA GCGACAGCAG CGGCGTATTG
GGCTTGGAGA AATGGACTGG TTTGACTATC TTGTTGGTCG GGATTATTAC CTCGCTACTG
TTGGTTGGCT TATTATTGGC GCGTCGCTCG AATCGCGAAG TCTATACGAG CCGCAATCAA
GTGCTGGACT ACCTCCACCA GTTCGATGTC GAAGACGTTG ATCTCAAGCA TTCCGCCACG
GGTGGATGGC ATTGTTCGTA CACCAACGGG TTGGCACACG GAATCAATAT TCGGGATGGA
TCCTCCTCCA GCAACGACGA TATTGCGGCT GGTCCTTCTC AGGGTGTTGG ACTGCTGCCA
GTACGAACAG GCGGATTCGA TCCGTTGACT ACTCCTTTGA ATTCGTCGAC ACTGCGCGAC
TCTCTCTTTG TGAACGACGA TAGTGATGGT AGATTAGGTC GGCCAGACGG CCACCACTCG
TTTGGAGATG ACAGTTCAGC GGATAGACGC CACACCGCAA TCCATGAATC CCGTCGTTCC
AGCACGAGAA AAACACGTCG AAAGAAGTTG GATGCGTGGG GACGTGAAAT CGTTTGA
|
|---|
| Protein sequence | MKNFRLQRTI LKSRYTNARE VAVILSLLVA LPYCIFPLTV VSAQQTYTPA GIQSGPDVVG
GSFASAAIFN PADNTVVVTG TTYGRFWQDR VDEADSSPGC FLVTARLPEV HHGDIAWVDS
GKISTIAHKE GCSSIALRGS KLFLSGHADT GGVLEELRNS ASIVPSTQYG MLLDMDYDGG
SSRVDIVGGR VLQDSPVVFP VAVVALPGES EVYVASMATD STVDHDYSNE QLDPQRFFPY
GSKFHMTVSR LSLNGARFQE GTVLNTLDEQ WTKPYSTKEA GDVYVAGMIK LSNEILVVVG
STTGYGGGVG GLVDTGPDMD GFVTKLHPVT GGVPVEPGNP KHQGTVRIQS VDGKDDFVAG
VCHDEYRHDP GHIYIVGSTS GDLDRSGSAA APRGYLMKLD FESLQPVWTK VLAANAATTT
IANATSGGRP SVRGVSCVVT PDGEAVYAAG VVENSGVLPL SGTMTSFGGK DIYVVKYDTV
DGKEGFVRQI GSSEDDEMAM RGGLLTDSQG NAVLVGHTAG SLYRTREESE KAGVSDIFLL
TISRYDGKYQ FPIEHPEYGQ QVEEDVVSGP GSAPQTPEMS GTTMNAKAPS TTGSDSSGVL
GLEKWTGLTI LLVGIITSLL LVGLLLARRS NREVYTSRNQ VLDYLHQFDV EDVDLKHSAT
GGWHCSYTNG LAHGINIRDG SSSSNDDIAA GPSQGVGLLP VRTGGFDPLT TPLNSSTLRD
SLFVNDDSDG RLGRPDGHHS FGDDSSADRR HTAIHESRRS STRKTRRKKL DAWGREIV
|
|---|
| |